Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 0.0e+00 1263.4 702 100.0
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.9e-271 939.1 709 77.3
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.8e-256 889.4 707 73.3
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.1e-250 870.2 710 72.4
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 3.6e-249 865.1 709 72.4
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.8e-246 854.7 718 70.1
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 5.9e-244 847.8 714 70.7
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.9e-243 845.5 728 69.9
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 5.0e-243 844.7 711 70.7
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 8.8e-240 833.9 710 69.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.5e-239 833.2 716 70.7
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 4.8e-238 828.2 716 70.5
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 2.4e-237 825.9 713 69.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.0e-236 822.8 756 67.2
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.0e-235 820.5 710 69.2
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.9e-235 818.9 700 69.4
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-235 818.1 718 68.1
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.8e-233 812.4 713 68.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.0e-232 808.9 705 68.2
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 3.0e-232 808.9 712 68.0
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 5.2e-232 808.1 708 68.4
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 7.5e-231 804.3 711 69.1
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.7e-230 803.1 713 67.9
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 3.7e-230 802.0 713 68.0
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.5e-228 795.0 710 67.2
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 5.0e-227 791.6 709 68.5
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.9e-226 789.6 700 67.7
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.1e-225 784.6 713 66.9
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.0e-224 783.9 710 66.8
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.7e-223 778.1 612 73.9
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 7.8e-220 767.7 715 65.2
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.1e-218 763.8 715 66.3
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.9e-218 763.1 654 70.9
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 4.3e-218 761.9 739 63.7
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 4.7e-217 758.4 715 66.2
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 4.4e-215 751.9 717 65.1
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.9e-214 749.2 606 72.9
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 4.9e-214 748.4 713 63.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.1e-213 747.3 728 65.2
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.2e-209 733.8 710 64.5
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 1.8e-208 729.9 711 63.0
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 4.9e-206 721.8 717 62.3
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 4.9e-206 721.8 712 63.2
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.1e-205 718.8 739 61.0
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.2e-204 717.2 713 62.8
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.1e-204 716.5 723 63.5
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.1e-204 716.5 711 62.6
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.0e-203 714.1 705 63.8
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.3e-203 713.8 729 61.7
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.3e-203 713.0 717 61.8
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.5e-202 710.3 696 62.4
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 7.3e-202 708.0 726 61.4
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 9.5e-202 707.6 716 61.7
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 2.1e-201 706.4 726 61.4
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.5e-199 700.3 713 61.2
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.0e-199 699.9 771 59.7
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 9.9e-199 697.6 713 62.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.1e-197 694.1 717 61.2
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.4e-197 693.7 710 61.3
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 3.2e-197 692.6 728 59.8
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 4.1e-197 692.2 723 60.0
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 2.7e-196 689.5 724 59.9
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 4.6e-196 688.7 732 61.9
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 6.0e-196 688.3 728 59.5
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-194 684.1 728 59.3
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 5.6e-194 681.8 719 60.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.8e-193 679.5 715 60.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.4e-192 677.2 713 60.6
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 6.9e-192 674.9 714 60.4
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.6e-191 672.9 713 60.0
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.6e-191 672.9 636 66.0
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.4e-191 672.5 740 58.4
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.4e-191 672.2 719 60.1
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.1e-188 663.3 707 60.3
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.0e-187 661.0 717 59.7
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-186 657.1 728 60.4
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.9e-186 656.8 728 60.3
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 7.3e-186 654.8 709 59.7
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 2.1e-185 653.3 728 60.0
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.1e-185 653.3 716 58.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 6.2e-185 651.7 740 58.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.4e-184 650.6 739 57.4
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.2e-182 643.3 743 58.7
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 5.4e-181 638.6 710 57.5
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 2.1e-180 636.7 726 57.4
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.6e-177 627.1 798 54.4
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.8e-177 626.3 720 56.8
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 5.3e-176 622.1 731 55.3
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 3.4e-175 619.4 715 56.5
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.4e-175 619.4 477 73.2
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 5.8e-175 618.6 710 56.2
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 6.4e-174 615.1 726 55.1
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.2e-172 610.9 724 55.5
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 8.7e-171 604.7 713 56.7
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 8.7e-171 604.7 714 54.9
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.4e-170 601.7 743 56.3
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 4.0e-168 595.9 770 53.4
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 9.0e-168 594.7 730 55.3
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.9e-163 579.3 754 52.8
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.9e-160 568.5 693 54.4
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 7.6e-159 565.1 725 52.6
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.4e-157 560.8 749 51.0
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.7e-156 556.6 380 80.3
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 5.7e-154 548.9 758 50.5
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 2.8e-153 546.6 615 58.0
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-152 544.7 725 52.3
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.4e-136 490.3 665 51.9
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.6e-135 486.9 449 66.1
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 3.0e-131 473.4 530 57.7
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.1e-116 424.1 493 57.6
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.8e-115 421.0 493 57.4
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.3e-105 388.3 744 41.3
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.3e-94 351.7 229 83.8
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.3e-93 347.1 431 54.1
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 2.3e-91 340.9 236 81.4
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.5e-85 320.9 213 81.7
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.5e-85 320.9 213 81.7
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.7e-84 316.6 231 76.2
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.1e-80 305.4 441 50.1
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 4.2e-80 303.5 437 52.2
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 3.9e-78 297.0 231 73.6
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.6e-76 291.6 186 83.3
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 2.0e-74 284.6 381 50.4
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 4.9e-73 280.0 517 41.6
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.7e-65 255.0 172 81.4
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 2.4e-64 251.1 413 42.6
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 4.6e-55 220.3 136 85.3
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 3.0e-54 217.6 408 44.4
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 7.4e-45 186.4 511 34.2
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 8.2e-44 183.0 307 45.6
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 8.2e-36 156.4 217 52.5
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 6.1e-31 140.2 91 81.3
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.4e-30 139.0 243 41.6
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 2.3e-30 138.3 86 87.2
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.6e-29 134.8 212 47.2
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 9.7e-29 132.9 189 52.4
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.2e-24 116.7 70 88.6
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.2e-24 116.7 70 88.6
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.2e-24 116.7 70 88.6
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.6e-23 114.4 72 84.7
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.2e-22 110.5 296 34.8
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.4e-21 106.7 70 85.7
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 4.2e-16 90.9 449 27.8
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 9.7e-13 79.7 65 64.6
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 6.3e-12 77.0 70 61.4
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.8e-11 75.5 308 33.4
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.3e-09 69.3 474 26.4
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.1e-08 66.2 344 27.0
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.1e-07 62.0 49 73.5
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 2.1e-07 62.0 359 26.5
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 6.1e-07 60.5 344 24.7
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.3e-06 58.5 353 25.8
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 3.0e-06 58.2 64 57.8
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 3.0e-06 58.2 353 25.8
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 4.0e-06 57.8 351 26.2
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 4.0e-06 57.8 40 67.5
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 5.2e-06 57.4 66 53.0
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 5.2e-06 57.4 360 26.4
A07p00700 Brassica napus HOM05D004485 ORTHO05D040257 6.8e-06 57.0 89 43.8
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 6.8e-06 57.0 346 26.9
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 8.8e-06 56.6 345 26.1


User provided reference genes

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