Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 0.0e+00 1397.9 705 100.0
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 0.0e+00 1122.8 678 83.0
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 6.9e-301 1036.9 698 76.1
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 1.3e-299 1032.7 704 74.0
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 3.2e-298 1028.1 699 75.4
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 2.7e-297 1025.0 673 76.8
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 2.7e-297 1025.0 673 76.8
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 6.0e-297 1023.8 696 75.1
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 5.1e-296 1020.8 672 76.5
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 6.7e-296 1020.4 695 74.5
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 1.1e-293 1013.1 683 75.3
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 1.1e-293 1013.1 752 69.5
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 1.4e-293 1012.7 716 73.3
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 2.4e-293 1011.9 691 74.8
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 4.1e-293 1011.1 670 76.7
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 2.9e-291 1005.0 686 73.5
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 1.9e-290 1002.3 668 74.9
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 2.3e-288 995.3 706 71.8
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 4.8e-286 987.6 669 73.8
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 6.3e-286 987.3 669 73.8
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.1e-285 986.5 686 73.5
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 1.8e-285 985.7 686 73.0
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 1.8e-285 985.7 669 73.5
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 5.3e-285 984.2 685 73.4
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 5.3e-285 984.2 676 73.4
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 6.9e-285 983.8 671 73.2
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 3.4e-284 981.5 706 71.8
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 1.7e-283 979.2 690 73.6
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 2.2e-283 978.8 672 73.1
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 1.9e-282 975.7 707 70.2
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 2.5e-282 975.3 671 72.9
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 2.5e-282 975.3 681 72.7
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 3.2e-282 974.9 704 70.7
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 4.2e-282 974.5 676 72.3
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 5.5e-282 974.2 668 73.1
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 9.4e-282 973.4 663 73.2
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 1.2e-281 973.0 677 72.5
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 6.1e-281 970.7 669 72.2
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 1.0e-280 969.9 705 72.3
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 1.4e-280 969.5 683 71.7
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 1.8e-280 969.1 678 71.8
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 3.0e-280 968.4 678 71.5
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 2.0e-279 965.7 690 71.7
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 7.4e-279 963.8 694 70.3
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 1.3e-278 963.0 677 71.9
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 2.2e-278 962.2 677 71.9
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 1.1e-277 959.9 666 71.5
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 1.4e-277 959.5 669 72.3
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 1.4e-277 959.5 669 71.6
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 2.4e-277 958.7 685 71.2
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 2.4e-277 958.7 685 71.2
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 2.4e-277 958.7 672 71.3
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 3.1e-277 958.4 674 72.0
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 1.5e-276 956.1 666 71.6
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 2.6e-276 955.3 674 71.5
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 2.2e-275 952.2 669 72.6
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 3.8e-275 951.4 670 71.8
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 5.0e-275 951.0 682 71.6
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 6.5e-275 950.7 667 72.3
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 1.1e-274 949.9 702 68.9
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 2.5e-274 948.7 677 71.9
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 7.2e-274 947.2 688 69.8
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 1.2e-273 946.4 693 71.6
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 7.9e-273 943.7 677 69.6
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 6.7e-272 940.6 684 70.2
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 7.4e-271 937.2 665 72.3
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 1.4e-269 932.9 671 70.6
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 3.1e-269 931.8 694 69.3
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 4.7e-265 917.9 672 69.2
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 6.1e-265 917.5 601 75.9
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 5.7e-263 911.0 672 68.9
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 9.7e-263 910.2 655 70.1
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 1.7e-262 909.4 706 67.3
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 2.2e-262 909.1 588 76.7
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 3.7e-262 908.3 736 65.2
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 8.5e-259 897.1 702 66.1
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 1.6e-257 892.9 719 65.1
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 1.4e-256 889.8 669 66.5
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 8.3e-254 880.6 667 69.1
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 4.9e-246 854.7 600 70.7
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 3.1e-245 852.0 637 65.5
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 2.3e-243 845.9 663 67.3
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 1.5e-242 843.2 624 68.6
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 1.4e-240 836.6 696 63.6
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 1.4e-240 836.6 578 73.0
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 4.4e-239 831.6 669 65.3
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 6.6e-235 817.8 571 70.9
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 1.4e-229 800.0 576 71.2
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 5.4e-229 798.1 620 66.8
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 5.0e-227 791.6 664 62.5
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 6.6e-203 711.4 1285 38.1
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 3.9e-187 659.1 669 52.5
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 2.5e-186 656.4 633 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 6.5e-182 641.7 666 52.1
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 6.5e-182 641.7 619 54.1
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 7.1e-181 638.3 424 75.5
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 1.9e-173 613.6 400 75.8
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 1.0e-163 581.3 389 75.3
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 1.3e-158 564.3 401 69.1
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 1.2e-135 488.0 722 41.7
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 1.8e-131 474.2 333 69.7
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 3.0e-131 473.4 618 46.4
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 2.8e-124 450.3 477 52.0
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 1.2e-111 408.3 273 72.5
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 5.2e-107 392.9 285 71.6
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 4.9e-97 359.8 464 48.3
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 4.1e-96 356.7 225 78.2
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 2.7e-95 354.0 274 68.6
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 8.1e-92 342.4 282 66.7
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 2.2e-81 307.8 286 59.1
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 2.9e-81 307.4 623 35.3
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 3.8e-81 307.0 203 74.9
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 2.4e-80 304.3 203 74.9
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 7.6e-58 229.6 155 73.5
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 3.9e-46 190.7 148 65.5
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 2.6e-45 188.0 144 68.8
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 4.1e-43 180.6 203 52.7
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 1.3e-33 149.1 195 48.2
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 3.8e-33 147.5 102 69.6
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 6.3e-28 130.2 98 69.4
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 5.3e-27 127.1 100 70.0
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.8e-20 104.8 146 39.7
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 5.9e-18 97.1 77 66.2
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 1.7e-17 95.5 68 64.7
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 8.0e-15 86.7 56 69.6
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 1.6e-10 72.4 68 54.4


User provided reference genes

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