Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1458.4 729 100.0
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1194.5 723 80.2
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1187.2 729 79.8
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1177.5 730 79.6
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1167.1 729 78.7
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1156.0 723 78.3
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1145.6 717 78.1
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1144.8 723 77.7
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1144.8 723 77.9
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1141.7 727 77.0
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1136.7 724 77.5
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1122.5 739 74.0
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1115.9 738 75.3
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1114.8 731 75.4
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1114.8 731 75.2
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1113.2 725 75.3
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1112.4 724 75.0
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1104.4 723 74.4
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1102.8 736 75.3
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 0.0e+00 1095.1 724 73.6
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1093.6 724 73.5
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1092.0 724 73.5
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1090.9 724 73.5
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 0.0e+00 1088.6 730 74.7
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1087.0 680 78.2
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 0.0e+00 1084.3 753 72.0
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 0.0e+00 1083.2 731 70.9
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1082.4 719 73.0
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 0.0e+00 1075.8 729 72.3
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 3.5e-311 1071.2 716 73.3
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 7.1e-309 1063.5 745 71.0
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 6.0e-308 1060.4 765 70.5
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 8.7e-307 1056.6 724 71.7
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 1.1e-306 1056.2 729 70.2
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 8.1e-305 1050.0 725 71.3
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 1.4e-304 1049.3 717 71.5
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 1.4e-304 1049.3 717 71.5
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 1.2e-303 1046.2 709 71.4
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 9.9e-303 1043.1 730 70.3
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 1.3e-302 1042.7 706 72.2
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 2.2e-302 1042.0 730 72.7
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 4.9e-302 1040.8 726 70.2
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 2.7e-300 1035.0 730 69.6
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.8e-299 1032.3 711 69.9
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 1.8e-299 1032.3 726 70.2
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 3.9e-299 1031.2 714 71.0
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 1.1e-296 1023.1 729 71.1
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 3.1e-296 1021.5 714 70.4
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 1.0e-294 1016.5 714 70.2
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 2.2e-294 1015.4 715 69.9
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 2.9e-294 1015.0 693 70.1
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 7.1e-293 1010.4 731 67.7
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 2.7e-292 1008.4 729 68.9
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 4.6e-292 1007.7 729 69.1
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.3e-291 1005.4 721 68.7
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.0e-291 1005.0 689 71.3
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 2.5e-290 1001.9 782 64.7
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 3.3e-290 1001.5 711 69.3
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 5.7e-290 1000.7 726 68.6
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 2.6e-287 991.9 703 68.6
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 4.5e-287 991.1 730 66.7
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 4.2e-285 984.6 731 66.3
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 7.9e-284 980.3 711 68.6
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 6.7e-283 977.2 712 67.7
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 2.4e-280 968.8 840 60.5
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 2.4e-280 968.8 730 66.4
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 7.7e-279 963.8 724 65.6
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 7.2e-277 957.2 712 66.9
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 9.4e-277 956.8 694 68.2
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 2.1e-276 955.7 727 65.2
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.4e-272 943.0 551 82.9
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.0e-270 936.8 608 76.0
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 6.1e-268 927.5 725 63.6
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 8.0e-268 927.2 710 65.9
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 5.2e-267 924.5 733 64.5
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 2.8e-265 918.7 734 62.9
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 3.7e-265 918.3 728 63.0
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 3.5e-263 911.8 728 65.0
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 7.7e-263 910.6 725 62.8
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 7.7e-263 910.6 725 62.8
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 7.7e-263 910.6 728 62.2
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 2.5e-261 905.6 729 62.1
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 2.7e-260 902.1 709 63.0
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.4e-259 899.8 716 65.9
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.8e-257 892.1 615 70.6
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 1.2e-250 870.2 742 60.1
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.5e-245 852.4 661 65.2
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 5.7e-242 841.3 633 66.5
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 1.1e-237 827.0 748 58.3
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 2.7e-223 779.2 612 63.9
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 3.0e-214 749.2 622 59.8
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.3e-213 745.7 473 77.4
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 1.3e-206 723.8 723 53.5
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.1e-196 689.9 470 71.9
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 4.3e-189 665.6 467 67.7
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 6.9e-187 658.3 473 67.0
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 1.9e-184 650.2 465 68.2
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 6.7e-182 641.7 755 45.8
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 1.5e-181 640.6 736 47.0
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 1.3e-180 637.5 448 67.6
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 8.5e-169 598.2 453 68.9
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 9.4e-168 594.7 480 62.1
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 9.7e-157 558.1 404 69.8
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 3.5e-154 549.7 430 62.6
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 1.5e-152 544.3 688 44.0
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 4.0e-150 536.2 381 71.1
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 4.7e-143 512.7 421 62.2
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 6.5e-137 492.3 689 42.8
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 8.6e-129 465.3 737 38.7
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 5.6e-128 462.6 768 37.0
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 1.0e-126 458.4 308 74.4
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 8.6e-113 412.1 372 58.9
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.9e-112 411.0 327 62.4
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.2e-111 408.3 293 71.0
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.2e-90 338.6 184 90.2
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.9e-75 288.1 198 69.7
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.2e-74 285.4 245 60.8
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.5e-53 215.3 315 43.2
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.6e-42 178.7 143 67.1
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 3.6e-42 177.6 154 57.8
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.8e-41 175.3 150 58.0
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.3e-39 169.1 162 56.2
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 8.2e-39 166.4 114 71.9
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.9e-36 157.9 112 68.8
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 2.0e-32 145.2 535 26.5
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.2e-31 139.8 267 37.1
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.3e-30 137.1 126 61.1
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 5.3e-30 137.1 124 57.3
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 7.0e-30 136.7 812 22.4
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.1e-26 125.2 150 48.7
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 1.1e-22 112.8 64 81.2
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.6e-21 109.0 83 67.5
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.7e-21 108.2 84 64.3
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.8e-20 104.4 74 67.6
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.4e-16 90.9 115 53.9
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 3.1e-14 84.7 51 76.5
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.7e-12 79.0 110 40.9
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 1.7e-12 79.0 60 60.0
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.6e-12 77.0 66 56.1
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 8.6e-12 76.6 51 74.5
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 2.5e-11 75.1 61 63.9
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.1e-10 70.5 56 66.1


User provided reference genes

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