Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 0.0e+00 1592.4 847 100.0
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 2.3e-181 640.2 864 48.0
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 3.4e-177 626.3 881 46.3
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 9.8e-177 624.8 883 46.7
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.4e-167 594.3 865 46.6
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 7.0e-167 592.0 866 46.4
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 2.5e-164 583.6 869 45.9
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.1e-162 578.2 900 44.6
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 3.4e-161 573.2 937 43.1
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 1.0e-157 561.6 873 44.3
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.1e-154 551.6 902 42.6
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 4.0e-154 549.7 835 45.1
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.1e-148 531.6 875 44.0
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.1e-148 531.6 901 41.1
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.9e-148 530.8 914 41.2
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 2.5e-148 530.4 910 42.9
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 9.6e-148 528.5 909 41.5
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 3.4e-145 520.0 895 41.7
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.2e-144 517.3 985 39.0
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.1e-143 515.0 917 40.6
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 2.5e-140 503.8 897 41.2
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.4e-138 498.0 842 42.9
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 4.0e-138 496.5 880 41.0
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 7.1e-135 485.7 881 40.7
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.0e-133 480.3 900 39.9
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 7.1e-127 459.1 980 38.0
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.9e-126 455.7 873 40.5
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 8.7e-125 452.2 881 39.5
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.9e-124 451.1 1035 35.7
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.4e-124 449.1 869 39.7
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 5.0e-120 436.4 885 39.2
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 6.7e-117 426.0 903 38.6
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 3.3e-116 423.7 857 37.9
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.3e-116 423.7 868 38.1
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 1.3e-115 421.8 692 42.3
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 8.2e-115 419.1 870 37.8
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 9.0e-114 415.6 1026 33.6
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 2.0e-113 414.5 869 36.6
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.9e-112 410.6 906 36.6
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.4e-111 408.3 885 37.7
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 4.2e-111 406.8 870 38.4
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.6e-110 403.7 580 47.4
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.0e-109 402.1 908 35.8
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 2.0e-108 397.9 878 37.9
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.7e-107 394.8 853 37.4
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 6.3e-107 392.9 855 37.2
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 3.1e-106 390.6 883 37.4
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 3.4e-105 387.1 886 35.1
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 1.1e-103 382.1 865 36.2
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.6e-102 377.1 976 34.5
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.3e-101 374.4 901 34.7
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 6.3e-99 366.3 881 34.6
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 2.4e-98 364.4 877 35.5
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.2e-97 362.1 915 35.4
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 6.5e-96 356.3 909 34.4
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 5.5e-95 353.2 982 33.4
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 2.7e-94 350.9 898 33.9
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.7e-91 341.7 974 32.3
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 3.5e-89 334.0 892 33.2
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.6e-86 325.1 859 33.4
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 4.7e-86 323.6 861 34.0
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 4.0e-85 320.5 886 32.8
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 8.8e-85 319.3 892 32.3
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 2.6e-84 317.8 880 33.8
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 3.4e-84 317.4 945 31.9
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.8e-82 311.6 958 31.3
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 4.1e-82 310.5 891 32.2
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 9.1e-82 309.3 789 33.0
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.0e-81 308.1 861 32.6
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 3.5e-81 307.4 664 35.8
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.0e-80 305.8 955 31.7
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.7e-80 305.1 863 32.2
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 5.5e-79 300.1 842 33.0
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 7.2e-79 299.7 925 32.6
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 8.0e-78 296.2 861 32.3
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 8.0e-78 296.2 857 32.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 2.3e-77 294.7 299 59.9
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 8.8e-77 292.7 925 32.3
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.2e-73 282.3 860 32.0
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.3e-72 278.9 870 30.2
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 1.7e-72 278.5 855 31.9
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 2.3e-72 278.1 845 32.1
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 1.1e-66 259.2 851 29.7
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.2e-65 255.8 855 30.9
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 1.3e-64 252.3 866 29.9
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.7e-64 251.9 618 36.7
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.7e-64 251.9 832 31.9
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.5e-63 248.1 582 34.4
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 3.3e-63 247.7 878 30.5
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 1.2e-62 245.7 915 28.4
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 7.5e-60 236.5 926 28.7
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 1.3e-59 235.7 860 28.6
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.2e-58 231.1 673 34.2
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 4.1e-58 230.7 860 33.3
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 5.4e-58 230.3 671 34.1
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.0e-56 226.1 919 28.4
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 8.1e-54 216.5 749 29.1
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.1e-53 216.1 922 28.7
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 4.0e-53 214.2 748 29.5
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 3.7e-51 207.6 703 32.6
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 4.1e-50 204.1 908 28.6
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 9.2e-50 203.0 485 33.8
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 1.1e-45 189.5 575 33.2
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.5e-44 185.7 888 26.4
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 9.9e-44 183.0 855 27.4
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 9.9e-44 183.0 1074 23.9
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 8.4e-43 179.9 862 28.8
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.1e-42 177.6 406 37.4
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 7.1e-42 176.8 856 28.7
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 9.2e-42 176.4 856 28.9
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 4.6e-41 174.1 860 28.0
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 1.3e-40 172.6 152 63.8
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 5.6e-39 167.2 858 30.2
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 2.8e-38 164.9 860 27.9
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.4e-37 161.8 919 25.0
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 4.0e-37 161.0 859 28.1
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 4.0e-37 161.0 859 28.1
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 5.2e-37 160.6 859 28.1
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 1.3e-35 156.0 879 27.0
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.9e-34 152.1 234 39.3
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 1.3e-32 146.0 866 27.5
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 3.0e-32 144.8 857 26.8
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 7.3e-31 140.2 181 49.2
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 9.6e-31 139.8 1010 23.7
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 9.0e-29 133.3 175 41.7
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 1.7e-27 129.0 344 36.9
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 2.7e-25 121.7 778 24.4
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.5e-23 115.2 553 24.4
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 4.6e-17 94.4 303 29.4
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.8e-16 92.4 172 36.6
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 1.3e-14 86.3 929 22.1
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.1e-14 85.5 312 30.8
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 4.8e-14 84.3 936 22.4
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 4.8e-14 84.3 925 21.5
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 5.3e-13 80.9 931 23.4
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 4.5e-12 77.8 247 34.0
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 7.6e-12 77.0 787 24.7
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 1.0e-11 76.6 929 22.3
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 2.9e-11 75.1 887 22.3
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 6.5e-11 73.9 919 21.9
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.1e-10 73.2 850 23.5
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 1.4e-10 72.8 235 25.1
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.5e-10 72.0 211 33.6
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 5.5e-10 70.9 279 28.3
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 5.5e-10 70.9 213 31.9
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 5.5e-10 70.9 448 27.7
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 7.1e-10 70.5 290 28.6
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 9.3e-10 70.1 830 23.1
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.2e-09 69.7 827 23.9
HPP92_010043 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.2e-09 69.7 197 28.9
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.6e-09 69.3 850 22.7
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 2.1e-09 68.9 164 31.7
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.1e-09 68.9 920 22.6
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.5e-09 68.2 135 35.6
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 4.6e-09 67.8 237 31.6
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 6.0e-09 67.4 878 22.0
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 7.9e-09 67.0 250 29.6
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.8e-08 65.9 55 61.8
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 2.3e-08 65.5 941 22.0
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.3e-08 65.5 850 22.6
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.3e-08 65.5 978 21.4
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.3e-08 65.5 936 21.4
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 3.0e-08 65.1 878 22.3
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 3.0e-08 65.1 381 26.8
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 3.0e-08 65.1 990 21.3
Zm00001eb339200 Zea mays HOM05D042755 ORTHO05D006515 3.0e-08 65.1 824 23.1
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 3.9e-08 64.7 222 30.6
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 3.9e-08 64.7 279 27.6
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 6.7e-08 63.9 130 30.0
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 8.7e-08 63.5 391 24.6
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 8.7e-08 63.5 857 22.2
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 1.5e-07 62.8 881 21.8
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.9e-07 62.4 872 22.1
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.9e-07 62.4 233 28.3
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.5e-07 62.0 940 21.2
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 5.7e-07 60.8 942 22.5
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 7.4e-07 60.5 283 27.2
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.6e-06 59.3 476 25.4
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 2.1e-06 58.9 267 27.7
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 2.8e-06 58.5 992 20.8
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 3.7e-06 58.2 600 22.0
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 3.7e-06 58.2 903 21.5
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 6.3e-06 57.4 319 27.3
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 6.3e-06 57.4 172 27.3
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 8.2e-06 57.0 213 30.0


User provided reference genes

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