Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 0.0e+00 1568.1 855 100.0
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 0.0e+00 1124.0 858 70.2
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 0.0e+00 1117.4 718 81.8
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 0.0e+00 1100.1 865 69.8
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 0.0e+00 1097.4 859 69.5
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 0.0e+00 1090.9 857 68.4
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 0.0e+00 1089.7 859 69.2
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 0.0e+00 1088.9 857 68.7
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 0.0e+00 1085.1 862 68.1
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 0.0e+00 1082.4 859 68.8
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 0.0e+00 1080.1 837 69.1
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.5e-310 1069.3 868 66.9
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 6.0e-307 1057.4 878 66.5
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 6.0e-307 1057.4 865 66.7
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 5.6e-305 1050.8 871 66.2
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 9.5e-305 1050.0 866 65.8
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 4.7e-304 1047.7 837 67.6
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.4e-303 1046.2 858 66.4
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.2e-302 1043.1 861 65.7
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 2.9e-301 1038.5 863 65.4
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 7.1e-300 1033.9 863 65.0
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.0e-298 1030.0 830 67.5
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.7e-298 1029.2 830 66.5
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 4.3e-297 1024.6 982 59.7
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 2.1e-296 1022.3 859 64.5
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 2.1e-296 1022.3 864 64.8
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.1e-295 1020.0 863 64.5
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 1.8e-295 1019.2 856 64.7
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 4.0e-295 1018.1 863 64.3
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 7.6e-294 1013.8 864 64.2
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 9.9e-294 1013.4 864 64.6
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 2.2e-293 1012.3 850 63.6
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 2.7e-291 1005.4 863 63.3
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 8.7e-290 1000.3 865 63.4
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.6e-288 996.1 900 61.2
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.1e-288 995.7 869 61.6
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.8e-288 995.3 871 61.7
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.3e-285 986.5 862 62.4
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 6.4e-285 984.2 981 57.1
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 3.2e-284 981.9 857 63.5
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 7.1e-284 980.7 867 61.5
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 6.7e-282 974.2 860 62.6
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 6.7e-282 974.2 863 61.4
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 2.5e-281 972.2 860 62.4
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.1e-279 966.8 864 61.5
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 5.3e-279 964.5 866 61.4
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 3.8e-277 958.4 860 62.1
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 8.4e-277 957.2 859 61.4
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 1.8e-274 949.5 865 61.4
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 2.5e-273 945.7 839 62.5
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 2.8e-272 942.2 860 60.1
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 3.4e-270 935.3 865 61.0
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.0e-269 933.7 860 60.1
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 1.7e-269 932.9 860 60.1
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 3.8e-269 931.8 860 60.7
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.9e-268 929.5 860 60.1
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 9.3e-268 927.2 857 60.4
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 1.3e-266 923.3 882 58.4
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 1.9e-265 919.5 838 60.6
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 2.9e-261 905.6 868 58.4
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 5.0e-261 904.8 830 60.6
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 8.5e-253 877.5 865 57.2
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.8e-250 869.8 862 57.7
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.8e-250 869.8 865 56.9
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 2.3e-250 869.4 852 56.7
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 3.9e-250 868.6 852 57.4
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 1.1e-249 867.1 861 57.6
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 1.1e-249 867.1 857 56.8
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 2.0e-249 866.3 859 58.2
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 6.3e-248 861.3 852 56.5
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 8.2e-248 860.9 857 56.9
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 2.6e-246 855.9 853 56.4
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 4.5e-246 855.1 865 56.8
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 1.7e-245 853.2 862 56.6
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 2.2e-245 852.8 862 56.6
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 2.9e-245 852.4 652 69.8
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 6.5e-245 851.3 1007 50.1
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 1.2e-243 847.0 838 56.8
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 4.7e-243 845.1 801 58.2
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 8.0e-243 844.3 855 56.0
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 1.0e-242 844.0 870 56.1
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 1.4e-242 843.6 838 56.4
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.4e-242 843.6 866 56.8
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 1.4e-239 833.6 839 56.1
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 5.3e-239 831.6 854 55.9
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 4.5e-238 828.6 840 55.2
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 2.9e-237 825.9 861 55.1
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 6.5e-237 824.7 851 55.5
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 6.1e-235 818.1 945 51.6
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 1.3e-232 810.4 861 53.9
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 1.1e-231 807.4 710 61.8
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 1.8e-231 806.6 853 54.3
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 3.2e-228 795.8 862 53.9
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 6.1e-227 791.6 853 54.3
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 3.0e-226 789.3 858 52.6
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 1.2e-225 787.3 851 52.9
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 2.0e-225 786.6 854 52.7
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 5.7e-225 785.0 834 53.8
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 1.3e-224 783.9 850 52.7
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 1.2e-222 777.3 856 52.8
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 1.0e-221 774.2 845 53.0
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 8.9e-218 761.1 868 53.2
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 2.6e-217 759.6 893 50.8
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 9.8e-217 757.7 856 50.9
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 2.2e-216 756.5 864 52.4
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 3.7e-216 755.7 653 63.6
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 4.1e-215 752.3 849 51.7
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 7.0e-215 751.5 855 51.1
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 2.3e-213 746.5 862 51.2
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 2.5e-212 743.0 854 50.8
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 3.3e-212 742.7 849 52.1
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 8.9e-210 734.6 658 61.6
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 8.9e-210 734.6 845 49.9
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.5e-209 733.8 859 50.5
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.6e-206 723.8 656 60.8
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 3.5e-206 722.6 840 51.2
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 1.3e-205 720.7 1000 45.9
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 7.3e-204 714.9 677 60.9
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.1e-203 713.4 727 57.1
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 1.1e-202 711.1 835 51.0
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 4.0e-202 709.1 866 48.7
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 7.8e-198 694.9 601 62.9
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 4.3e-196 689.1 844 49.1
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 7.3e-196 688.3 851 47.8
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 6.0e-190 668.7 864 48.6
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 6.2e-187 658.7 849 47.6
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 6.8e-186 655.2 645 55.5
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 2.0e-185 653.7 640 55.8
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 3.5e-182 642.9 852 47.1
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 3.1e-170 603.2 636 53.6
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 2.9e-168 596.7 851 45.4
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 8.4e-168 595.1 864 44.0
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 3.2e-167 593.2 824 44.2
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.1e-162 578.2 887 41.9
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 2.0e-161 573.9 837 41.6
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 6.7e-157 558.9 837 41.5
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 7.1e-151 538.9 876 42.4
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 1.3e-149 534.6 594 53.9
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 2.5e-148 530.4 593 53.8
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 1.1e-143 515.0 794 41.2
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 5.5e-143 512.7 770 43.9
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 8.8e-133 478.8 662 47.9
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 8.2e-131 472.2 570 49.6
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.4e-130 471.5 866 38.1
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 3.2e-127 460.3 835 38.4
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.2e-126 458.4 851 38.4
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.5e-124 451.4 439 56.3
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 1.8e-109 401.4 471 47.1
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 9.8e-84 315.8 802 33.5
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 6.0e-73 280.0 456 43.0
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-71 275.0 670 31.5
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 4.8e-62 243.8 338 46.2
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 4.9e-59 233.8 336 46.4
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 4.3e-55 220.7 279 49.5
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 3.6e-54 217.6 194 56.7
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 4.2e-50 204.1 240 50.0
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.0e-48 199.5 264 47.3
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 2.8e-46 191.4 211 50.7
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 9.0e-45 186.4 113 77.0
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.2e-41 176.0 343 40.5
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 1.3e-40 172.6 152 63.2
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 2.3e-40 171.8 304 37.5
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 3.1e-37 161.4 236 41.9
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 1.2e-33 149.4 206 42.2
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 1.1e-29 136.3 116 62.9
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 4.5e-28 131.0 116 58.6
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 4.3e-23 114.4 119 56.3
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.1e-21 108.2 114 56.1
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 4.1e-21 107.8 101 59.4
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.6e-20 105.1 109 55.0
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 3.4e-20 104.8 101 58.4
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.3e-19 102.8 69 72.5
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.1e-18 99.8 151 39.7
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 9.4e-18 96.7 121 45.5
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 2.7e-17 95.1 112 50.0
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.3e-16 92.0 73 58.9
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.5e-15 89.4 153 45.1
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 2.2e-14 85.5 51 76.5
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.5e-10 72.8 155 35.5
MD02G1023900 Malus domestica HOM05D003622 ORTHO05D048666 1.5e-10 72.8 89 44.9
MBI13_g02371_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D000708 4.2e-10 71.2 65 58.5
CBR_g27932 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-09 68.2 72 45.8
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 8.0e-09 67.0 44 68.2
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.3e-08 65.5 135 43.7
Actinidia38716 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.6e-07 62.0 57 54.4
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 2.8e-06 58.5 47 51.1


User provided reference genes

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