Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.8e-86 325.1 677 100.0
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 6.2e-50 203.8 675 87.6
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 4.5e-40 171.0 113 75.2
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 5.8e-40 170.6 116 74.1
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 5.8e-40 170.6 112 76.8
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 7.6e-40 170.2 116 74.1
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.3e-39 169.5 116 73.3
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 1.7e-39 169.1 116 73.3
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 2.9e-39 168.3 112 75.0
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 3.8e-39 167.9 676 86.4
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 6.4e-39 167.2 113 74.3
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 8.4e-39 166.8 114 73.7
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 8.4e-39 166.8 111 73.9
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.4e-38 166.0 116 71.6
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.4e-38 166.0 112 75.0
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-38 165.6 112 75.9
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.9e-38 165.6 112 74.1
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.9e-38 165.6 110 74.5
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 3.2e-38 164.9 116 73.3
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.5e-38 164.1 110 76.4
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.5e-38 164.1 110 76.4
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 7.1e-38 163.7 107 77.6
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 7.1e-38 163.7 108 74.1
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 9.3e-38 163.3 105 75.2
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.2e-37 162.9 116 71.6
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-37 161.4 116 71.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 3.5e-37 161.4 116 69.8
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 4.6e-37 161.0 107 72.9
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 4.6e-37 161.0 116 71.6
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 4.6e-37 161.0 116 71.6
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 4.6e-37 161.0 116 71.6
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 6.0e-37 160.6 107 74.8
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 7.9e-37 160.2 111 73.0
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.0e-36 159.8 116 68.1
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.0e-36 159.8 116 68.1
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.0e-36 159.8 114 68.4
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.3e-36 159.5 107 72.9
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.3e-36 158.7 116 70.7
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.3e-36 158.7 116 70.7
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 5.1e-36 157.5 116 69.0
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.7e-36 157.1 116 70.7
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 8.7e-36 156.8 114 67.5
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 8.7e-36 156.8 116 67.2
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.1e-35 156.4 109 72.5
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.1e-35 156.4 113 71.7
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-35 155.6 113 70.8
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.9e-35 155.6 109 69.7
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.9e-35 155.6 116 69.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.5e-35 155.2 109 71.6
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.5e-35 155.2 107 73.8
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 5.6e-35 154.1 152 50.7
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 5.6e-35 154.1 109 70.6
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 9.6e-35 153.3 107 72.9
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.3e-34 152.9 114 69.3
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.8e-34 151.8 116 68.1
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 3.7e-34 151.4 107 70.1
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 3.7e-34 151.4 110 70.0
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 4.8e-34 151.0 116 68.1
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 4.8e-34 151.0 116 67.2
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 4.8e-34 151.0 111 68.5
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 6.2e-34 150.6 112 65.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.2e-34 150.6 108 69.4
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 8.1e-34 150.2 106 72.6
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 8.1e-34 150.2 113 67.3
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 8.1e-34 150.2 113 68.1
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.1e-33 149.8 107 67.3
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-33 149.4 116 65.5
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.4e-33 149.4 116 67.2
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.8e-33 149.1 112 66.1
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-33 149.1 116 63.8
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-33 149.1 116 65.5
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 2.4e-33 148.7 112 67.9
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.3e-33 147.5 116 62.1
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.5e-32 146.0 109 67.9
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.6e-32 145.2 102 72.5
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 5.8e-32 144.1 106 66.0
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 7.6e-32 143.7 116 63.8
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 7.6e-32 143.7 102 65.7
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.3e-31 142.9 151 46.4
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-30 139.8 116 59.5
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 9.3e-30 136.7 88 72.7
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-29 136.0 116 64.7
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.1e-29 135.6 87 73.6
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 2.1e-29 135.6 151 43.7
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 2.1e-29 135.6 152 58.6
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.9e-29 133.7 114 61.4
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.7e-28 130.6 152 42.1
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 8.7e-28 130.2 152 42.1
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-27 129.0 116 62.1
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 8.2e-26 123.6 89 67.4
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.1e-25 123.2 88 69.3
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 1.1e-25 123.2 88 67.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.0e-25 120.2 116 60.3
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.5e-24 119.4 88 65.9
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 3.4e-24 118.2 85 67.1
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 3.4e-24 118.2 85 67.1
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-23 115.9 108 49.1
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 2.9e-23 115.2 154 39.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.9e-23 115.2 84 64.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 3.8e-23 114.8 152 39.5
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 1.4e-22 112.8 152 38.8
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 3.2e-22 111.7 79 69.6
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 9.3e-22 110.2 76 71.1
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 6.1e-21 107.5 154 50.0
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 3.0e-20 105.1 75 66.7
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 5.1e-20 104.4 104 51.9
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 8.7e-20 103.6 79 64.6
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 2.5e-19 102.1 74 67.6
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 3.3e-19 101.7 79 62.0
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 4.3e-19 101.3 79 60.8
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 7.4e-19 100.5 146 38.4
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.3e-18 99.8 76 65.8
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.7e-18 98.2 79 60.8
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 8.2e-18 97.1 149 33.6
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.3e-17 94.4 116 52.6
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.6e-16 92.0 65 69.2
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.6e-16 92.0 117 47.9
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 4.5e-16 91.3 150 44.7
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 5.9e-16 90.9 68 64.7
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 5.9e-16 90.9 142 32.4
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.0e-15 87.8 148 35.8
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 2.5e-14 85.5 81 51.9
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.2e-14 84.7 105 43.8
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 5.5e-14 84.3 75 57.3
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.7e-13 82.0 75 53.3
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 9.7e-11 73.6 141 31.9
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 8.2e-10 70.5 45 77.8
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-08 66.6 51 64.7
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 5.9e-08 64.3 75 44.0


User provided reference genes

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