Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 0.0e+00 1442.2 1025 100.0
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 5.9e-261 904.8 1034 72.0
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.7e-260 903.3 1039 71.0
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.2e-258 897.1 1035 67.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.8e-257 893.3 1037 67.3
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 5.8e-256 888.3 1015 68.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 6.0e-253 878.2 1037 73.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 7.8e-253 877.9 942 75.3
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.0e-252 877.5 1044 69.9
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.2e-249 865.1 1028 68.5
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 6.8e-249 864.8 1028 72.1
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.2e-248 864.0 1050 70.2
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-247 860.1 1030 71.4
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.9e-247 859.4 1041 71.6
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.2e-246 855.9 1033 69.9
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.7e-245 852.8 1024 70.5
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.1e-243 847.4 1037 70.5
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-243 847.0 1039 69.8
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 5.6e-243 845.1 1030 68.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 3.1e-241 839.3 1051 68.3
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.4e-239 831.6 894 75.4
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 3.3e-235 819.3 1110 63.3
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-234 817.4 893 69.2
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.6e-234 817.0 1074 61.9
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 6.9e-233 811.6 1025 68.4
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 8.9e-233 811.2 1025 68.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.2e-232 810.8 889 71.9
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.5e-232 810.4 1032 62.8
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.9e-232 807.7 1041 58.8
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.1e-230 804.3 1036 68.6
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.0e-228 797.7 1023 67.7
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 6.6e-228 795.0 1035 63.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.6e-226 789.3 917 74.5
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 2.2e-223 780.0 1034 67.3
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.4e-223 778.5 838 72.6
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.4e-222 775.4 894 75.3
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 7.1e-222 775.0 915 74.4
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.0e-220 771.2 1030 68.8
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 6.7e-220 768.5 1038 68.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.3e-218 764.2 930 73.3
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.2e-218 761.9 930 73.3
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 8.1e-218 761.5 916 74.5
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.1e-217 761.1 1046 68.2
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.4e-217 760.0 908 72.9
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.0e-217 759.2 1028 61.7
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 9.0e-217 758.1 1044 66.3
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.2e-215 753.4 960 69.0
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 6.0e-213 745.3 834 78.2
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 7.9e-213 745.0 1032 67.3
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.0e-212 744.6 919 71.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.8e-212 743.8 1033 65.9
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 3.0e-212 743.0 893 72.6
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.9e-212 742.7 832 75.1
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 5.1e-212 742.3 877 74.2
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 6.7e-212 741.9 912 71.1
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 8.7e-212 741.5 1043 62.8
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 3.3e-211 739.6 916 71.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.6e-210 737.3 838 73.2
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.1e-210 734.9 892 72.1
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.8e-209 733.8 1025 63.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.3e-209 732.3 826 74.7
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.0e-209 731.5 939 68.2
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 5.8e-208 728.8 907 70.7
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.7e-207 727.2 1042 65.4
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.9e-207 726.5 911 73.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 4.9e-207 725.7 967 66.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.2e-206 723.0 1061 66.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 4.2e-206 722.6 806 76.3
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 7.1e-206 721.8 821 72.8
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 9.3e-206 721.5 909 68.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.1e-205 720.3 910 61.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.0e-204 718.0 1034 61.1
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.3e-204 717.6 1022 65.4
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.3e-204 717.6 1028 61.2
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.8e-204 717.2 915 70.8
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.8e-204 717.2 923 70.6
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.1e-204 715.7 915 70.8
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.5e-203 714.1 894 64.7
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.5e-203 713.4 1035 61.4
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 3.3e-203 713.0 832 72.4
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 4.3e-203 712.6 871 71.2
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 5.7e-203 712.2 910 70.8
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 5.7e-203 712.2 911 69.8
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 2.1e-202 710.3 860 74.1
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 4.1e-201 706.1 906 70.8
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 5.3e-201 705.7 922 70.2
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 6.9e-201 705.3 916 70.5
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 9.0e-201 704.9 1025 63.0
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.4e-200 703.0 1026 64.7
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 5.9e-200 702.2 941 67.1
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 7.6e-200 701.8 915 70.8
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 7.6e-200 701.8 912 68.1
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.0e-199 701.4 801 72.3
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 3.8e-199 699.5 1029 63.8
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 7.2e-198 695.3 807 74.5
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 7.2e-198 695.3 1022 65.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.0e-196 691.4 794 73.0
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.9e-195 687.2 1040 61.2
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 9.7e-195 684.9 900 71.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.2e-194 683.7 1034 64.5
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 8.2e-194 681.8 887 69.4
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 4.1e-193 679.5 804 66.7
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 7.7e-192 675.2 904 66.7
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 7.7e-192 675.2 952 64.4
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.9e-191 673.3 907 67.6
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.2e-190 669.8 830 73.0
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 5.7e-187 659.1 840 67.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.1e-185 654.8 1057 57.0
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 3.4e-184 649.8 836 68.7
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 4.5e-184 649.4 857 69.3
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 7.7e-184 648.7 814 72.9
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.9e-182 644.0 857 71.4
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.5e-182 643.7 830 64.1
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.4e-180 637.9 905 67.1
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.8e-180 637.5 916 66.3
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 3.0e-180 636.7 800 70.8
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.5e-179 634.4 817 70.4
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 4.5e-176 622.9 908 60.1
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 4.4e-171 606.3 845 56.8
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.2e-170 604.0 889 59.7
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.4e-169 601.3 890 59.1
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.4e-169 601.3 890 59.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.1e-169 600.1 859 67.2
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.0e-168 597.4 818 66.4
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 5.9e-168 595.9 890 58.8
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 3.8e-167 593.2 895 59.2
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.7e-165 587.0 690 82.3
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.0e-164 583.6 904 61.9
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.0e-163 580.9 793 66.3
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 7.5e-163 578.9 973 54.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 4.8e-162 576.2 887 58.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.1e-161 573.5 741 65.3
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-160 571.2 887 58.5
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.5e-159 565.8 689 72.3
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.5e-158 564.7 889 57.9
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-156 558.1 889 58.4
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.9e-154 549.7 830 67.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 4.1e-153 546.6 890 57.4
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 9.2e-153 545.4 1027 50.9
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.2e-149 535.0 911 59.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 4.7e-149 533.1 892 60.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 8.1e-133 479.2 734 62.9
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.8e-131 473.0 959 51.2
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-129 468.8 793 48.2
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 9.5e-126 455.7 804 54.2
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.2e-125 455.3 984 48.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.4e-122 443.0 905 46.3
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 9.2e-121 439.1 651 73.1
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-118 432.2 853 56.2
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.6e-117 428.3 712 59.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.0e-107 394.8 987 45.0
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 4.2e-105 387.1 897 35.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.9e-98 364.4 645 72.4
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 7.1e-97 359.8 1298 31.6
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.0e-95 355.9 449 70.4
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.5e-94 351.3 436 58.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.2e-93 346.7 746 50.3
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.9e-90 337.8 962 46.6
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 9.3e-89 332.8 455 50.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 4.3e-86 323.9 693 58.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.6e-80 304.3 664 54.5
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 6.1e-72 276.9 272 65.4
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.6e-70 271.6 553 41.6
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.2e-56 226.1 232 52.2
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.6e-56 225.7 326 74.5
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 6.7e-55 220.3 138 80.4
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.0e-47 194.9 201 55.7
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.3e-45 186.8 357 39.5
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.3e-39 168.7 123 70.7
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 8.3e-29 133.7 88 78.4
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.4e-28 132.9 119 60.5
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 5.0e-26 124.4 73 82.2
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.4e-20 106.3 66 81.8
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.1e-15 90.1 230 80.0
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.4e-12 79.0 191 32.5
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 7.1e-12 77.4 62 58.1


User provided reference genes

Program Settings