Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 0.0e+00 2515.3 1246 100.0
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.8e-289 999.2 1304 46.1
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.4e-267 927.2 1303 44.4
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 6.8e-259 898.3 1305 43.1
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 7.0e-256 888.3 1304 43.6
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 2.2e-249 866.7 1321 42.5
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.9e-246 856.3 1304 42.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 8.6e-246 854.7 1299 42.6
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 2.6e-242 843.2 1246 43.1
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 5.4e-240 835.5 1315 41.1
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.1e-237 827.8 1376 40.1
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.3e-237 825.9 1321 41.9
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 9.5e-237 824.7 1322 42.0
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.2e-232 809.7 1275 41.3
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 5.4e-232 808.9 1277 41.3
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.7e-231 806.6 1317 41.4
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 6.0e-231 805.4 1322 42.2
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.0e-230 804.7 1240 42.3
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.0e-230 803.1 1321 40.8
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 7.3e-229 798.5 1275 40.9
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.3e-225 787.7 1321 40.6
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.2e-225 786.9 1315 40.5
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 6.0e-223 778.9 806 56.6
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.0e-210 737.3 1344 39.2
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.8e-198 697.6 1317 38.6
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 2.1e-196 690.6 1325 38.3
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.1e-195 686.8 1303 38.1
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 1.3e-188 664.8 1271 37.3
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 8.2e-188 662.1 1312 37.4
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.5e-186 656.4 1312 37.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.8e-186 656.0 1310 37.0
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.9e-185 653.7 1312 36.7
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 2.6e-162 577.4 1315 35.7
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.3e-161 575.1 1354 33.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 8.8e-158 562.4 1455 32.2
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.1e-152 545.4 1338 33.6
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 5.9e-138 496.5 1106 36.3
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.3e-128 464.2 1356 31.9
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.6e-127 461.8 1261 31.9
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 8.9e-126 456.1 1259 32.7
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.7e-124 451.8 1031 33.9
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 6.4e-116 423.3 1319 32.4
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 8.3e-116 422.9 1286 30.9
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.4e-115 422.2 1269 31.3
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 4.0e-110 404.1 1282 31.0
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 4.0e-110 404.1 1286 30.9
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 9.9e-109 399.4 1260 30.0
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.7e-108 398.7 1304 31.0
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.4e-107 394.8 1295 31.0
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.1e-104 386.0 1296 30.9
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.5e-104 385.6 1290 30.3
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.9e-104 385.2 1312 30.1
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.5e-104 384.8 1316 30.4
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.2e-103 382.5 1299 30.0
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.6e-103 382.1 1285 31.3
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 2.4e-102 378.3 1296 29.6
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 4.0e-102 377.5 1289 30.5
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.6e-101 374.8 1282 31.0
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.9e-101 372.9 989 33.3
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.4e-99 369.0 1265 29.2
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.7e-98 364.8 1317 29.2
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 2.1e-95 355.1 1266 28.8
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.4e-94 352.4 1263 29.3
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.5e-93 349.0 1239 30.4
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.2e-91 341.3 562 39.7
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.7e-90 338.2 1250 29.4
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 3.5e-90 337.8 1257 27.8
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 6.0e-90 337.0 1280 28.1
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-89 335.9 1290 29.5
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.3e-89 335.1 1403 28.0
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 3.0e-89 334.7 1260 28.3
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.3e-87 329.3 1242 29.5
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.1e-86 326.2 1252 28.5
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 4.0e-86 324.3 1301 28.4
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 5.5e-83 313.9 1302 28.2
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.6e-82 312.4 1255 28.3
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 7.9e-82 310.1 382 43.7
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 4.3e-80 304.3 265 61.5
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 8.1e-79 300.1 1270 28.8
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 7.6e-77 293.5 1265 27.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.3e-76 292.7 1219 26.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.3e-76 292.7 1268 27.9
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 5.5e-75 287.3 1271 27.7
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.3e-73 282.0 1319 27.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 3.9e-73 281.2 1248 27.1
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 3.7e-71 274.6 1245 26.6
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 4.8e-71 274.2 1238 26.3
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 4.8e-71 274.2 1238 26.3
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-67 262.7 1239 26.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.4e-67 262.7 1239 26.3
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 7.2e-67 260.4 1349 25.1
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 5.1e-65 254.2 597 33.8
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.9e-62 243.8 1319 26.5
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.0e-60 237.7 1315 26.1
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.2e-58 233.0 1235 25.8
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 7.9e-58 230.3 1249 26.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 7.9e-58 230.3 1249 26.9
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-57 229.6 1249 26.8
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 3.0e-57 228.4 1233 25.7
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.3e-55 223.0 1242 26.9
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 8.2e-55 220.3 1242 26.8
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 9.1e-54 216.9 1300 24.9
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 6.5e-52 210.7 1233 25.6
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-50 206.5 1261 24.8
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 3.6e-50 204.9 1289 24.9
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.9e-50 203.8 1276 25.1
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.4e-49 203.0 842 26.8
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.8e-49 202.6 739 29.8
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 4.4e-48 198.0 1330 25.2
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.7e-47 196.1 1301 25.1
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.2e-42 179.9 822 26.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 2.7e-42 178.7 1300 24.3
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 3.0e-41 175.3 1303 24.6
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.0e-41 174.9 482 32.4
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.0e-41 174.9 482 32.4
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.7e-41 174.1 482 32.4
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 5.7e-40 171.0 1299 24.6
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.6e-37 162.9 580 28.6
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 5.9e-37 161.0 1208 24.4
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.7e-37 160.6 316 37.3
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.0e-36 160.2 355 35.5
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 2.9e-36 158.7 1249 23.1
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 8.5e-36 157.1 1345 22.8
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.5e-35 156.4 1266 25.0
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.5e-35 154.5 339 37.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.6e-34 151.8 1246 23.6
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 2.6e-32 145.6 1266 23.9
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.3e-31 143.3 114 57.9
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 4.8e-31 141.4 111 67.6
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 4.8e-31 141.4 1239 23.7
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 2.4e-30 139.0 1290 23.3
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.0e-28 133.7 1264 22.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.7e-28 132.9 766 24.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.4e-25 123.2 775 23.6
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 1.5e-24 119.8 656 27.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.6e-24 119.0 1264 22.5
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 5.7e-24 117.9 413 29.1
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.3e-23 116.7 1321 23.8
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.7e-23 116.3 1020 23.5
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 2.2e-23 115.9 403 28.3
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.2e-23 115.9 1267 22.3
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.8e-22 112.8 1260 22.9
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.4e-22 112.5 1270 22.5
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.2e-21 110.2 1361 22.8
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.5e-21 108.6 1311 22.8
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 4.5e-21 108.2 256 35.2
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.7e-20 106.3 1238 23.2
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 8.6e-20 104.0 840 24.5
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.5e-19 102.4 1059 22.6
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 7.3e-19 100.9 1229 23.0
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 9.5e-19 100.5 224 37.5
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 9.5e-19 100.5 112 47.3
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 6.1e-18 97.8 586 25.3
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.6e-16 92.4 109 45.0
Lj8P589T28 Lonicera japonica HOM05D004021 ORTHO05D003767 9.8e-16 90.5 384 28.4
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 9.8e-16 90.5 126 39.7
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-15 89.7 302 29.1
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.9e-15 89.0 837 24.0
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.7e-15 88.6 114 44.7
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 4.1e-14 85.1 123 40.7
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 5.4e-14 84.7 63 50.8
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 5.4e-14 84.7 108 42.6
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 5.4e-14 84.7 777 23.2
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 2.7e-13 82.4 564 24.1
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.3e-12 80.1 322 27.6
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 5.0e-12 78.2 89 39.3
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 8.6e-12 77.4 115 41.7
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 4.3e-11 75.1 271 26.6
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 4.7e-10 71.6 79 41.8
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 4.7e-10 71.6 75 40.0
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 8.0e-10 70.9 71 43.7
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 6.8e-09 67.8 91 44.0
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.4e-08 65.5 89 39.3
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 9.8e-08 63.9 1259 21.2
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 1.3e-07 63.5 112 37.5
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.7e-07 63.2 96 34.4
Zm00001eb417870 Zea mays HOM05D018893 ORTHO05D020945 2.9e-07 62.4 77 39.0
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 6.4e-07 61.2 184 26.1
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 6.4e-07 61.2 72 40.3
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 6.4e-07 61.2 59 47.5
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 8.3e-07 60.8 59 49.2
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 4.1e-06 58.5 1179 22.3
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 5.4e-06 58.2 83 34.9


User provided reference genes

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