Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 2560.8 1342 100.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1817.0 1353 70.9
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1647.5 1403 62.9
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1599.3 1343 62.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1598.2 1363 62.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1595.9 1353 61.9
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1593.9 1363 61.9
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1593.9 1359 61.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1586.6 1327 64.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1578.9 1406 60.8
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1574.7 1353 62.6
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1570.4 1404 61.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1564.3 1368 61.0
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1563.9 1344 62.7
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1558.5 1344 62.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1544.3 1373 61.3
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1529.6 1391 60.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1526.9 1361 61.0
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1521.1 1439 58.4
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1499.6 1391 59.5
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1477.6 1342 59.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1459.1 1353 59.4
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1457.6 1395 57.2
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1452.2 1367 57.4
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1449.5 1360 57.6
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1448.3 1394 57.9
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1447.6 1194 63.7
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1443.3 1350 58.4
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1439.5 1379 57.3
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1436.4 1355 57.1
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1429.1 1403 56.3
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1424.5 1394 55.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1417.9 1373 56.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1417.5 1360 56.5
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1412.1 1444 54.2
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1411.7 1348 56.7
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1406.3 1326 58.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1389.0 1383 55.0
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1388.6 1346 56.5
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1386.3 1359 56.8
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1380.2 1362 55.1
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1373.6 1374 55.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1373.2 1360 55.6
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1370.9 1360 56.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1367.1 1356 55.0
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1361.7 1358 54.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1358.6 1383 53.4
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1355.9 1351 55.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1355.5 1365 56.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1340.5 1365 54.7
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1333.9 1396 52.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1333.9 1417 53.3
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1332.4 1333 55.4
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1326.2 1337 54.5
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1326.2 1362 54.8
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1325.5 1374 53.3
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1317.4 1329 54.5
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1311.2 1465 51.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1302.0 1342 54.2
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1300.4 1409 51.7
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1297.3 1346 54.2
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1296.2 1362 53.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1293.1 1346 55.0
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1292.3 1348 54.1
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1291.9 1344 54.5
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1290.8 1368 52.1
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1289.6 1346 53.9
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1280.8 1433 50.7
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1269.6 1536 49.0
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1267.3 1127 61.7
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1266.5 1357 52.4
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1256.9 1383 51.6
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1254.6 1359 52.5
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1195.3 1399 47.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1186.8 1580 46.6
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1179.5 1354 49.8
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1171.4 1356 50.6
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1087.8 1118 54.5
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1076.2 1358 45.3
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 2.8e-303 1045.8 1034 54.7
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 5.5e-291 1005.0 1001 56.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.2e-282 977.2 1008 54.8
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 6.2e-266 921.8 1156 46.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.6e-258 897.1 1343 41.3
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.6e-258 896.0 827 58.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 7.5e-256 888.3 1031 49.8
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 4.9e-247 859.0 736 61.8
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.9e-246 857.1 830 55.8
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 8.7e-236 821.6 717 60.8
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 3.2e-198 696.8 820 49.4
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.4e-188 664.8 1344 35.4
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 3.1e-177 627.1 523 63.7
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 1.2e-173 615.1 1401 31.9
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 8.0e-173 612.5 444 72.1
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.2e-166 590.5 444 68.9
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.3e-151 541.2 393 69.7
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 6.6e-151 539.7 609 51.7
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 5.8e-147 526.6 1411 29.6
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.7e-146 525.0 343 75.5
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.6e-136 490.3 663 41.9
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.2e-131 475.7 535 49.9
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 8.1e-125 453.0 533 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 2.2e-106 391.7 1018 30.6
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.8e-98 364.4 266 70.7
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 5.3e-84 317.4 354 54.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.8e-77 294.3 429 38.2
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.3e-74 286.2 375 44.5
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-72 279.3 462 39.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 5.7e-70 270.8 570 36.1
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 3.5e-67 261.5 751 31.7
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 2.9e-66 258.5 230 60.9
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 9.7e-62 243.4 231 57.1
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 2.4e-60 238.8 149 80.5
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.6e-59 236.1 400 40.0
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-55 223.0 442 33.9
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.8e-55 220.3 159 70.4
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.4e-54 218.4 355 41.4
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.7e-54 217.6 134 79.1
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 8.3e-53 213.8 192 61.5
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.5e-49 203.0 141 73.8
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 9.8e-46 190.3 150 66.0
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 3.3e-41 175.3 281 38.8
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 7.3e-41 174.1 171 56.1
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 6.4e-37 161.0 172 52.9
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.4e-36 159.8 244 37.7
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 5.4e-36 157.9 210 44.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 2.7e-35 155.6 1334 21.2
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 3.0e-34 152.1 707 25.5
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 3.9e-34 151.8 443 29.1
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 4.3e-33 148.3 138 56.5
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.4e-31 143.3 200 46.0
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 7.8e-27 127.5 161 46.6
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.7e-26 126.3 1320 21.4
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.0e-26 125.6 78 76.9
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 3.3e-25 122.1 133 50.4
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.2e-24 120.2 97 64.9
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.4e-23 116.7 274 33.2
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.9e-20 106.3 65 83.1
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.7e-19 102.4 123 51.2
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.3e-18 99.4 566 23.1
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-17 96.3 61 72.1
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.4e-15 90.1 142 42.3
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 3.1e-15 89.0 88 54.5
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 4.0e-15 88.6 88 52.3
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 3.2e-12 79.0 51 74.5
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 2.3e-10 72.8 99 42.4
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 5.1e-10 71.6 99 41.4
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 6.6e-10 71.2 172 34.9
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 6.6e-10 71.2 57 66.7
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-09 70.5 106 44.3
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.1e-07 63.9 68 42.6
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 3.1e-07 62.4 60 58.3
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.0e-07 62.0 111 36.0
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 3.4e-06 58.9 66 47.0
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 9.9e-06 57.4 106 38.7


User provided reference genes

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