Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 4.0e-37 157.5 76 100.0
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 4.9e-27 124.0 75 81.3
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 8.3e-27 123.2 80 78.8
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 8.3e-27 123.2 75 77.3
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 8.3e-27 123.2 75 82.7
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 3.2e-26 121.3 76 81.6
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 7.0e-26 120.2 75 73.3
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 6.0e-25 117.1 73 80.8
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 6.0e-25 117.1 73 80.8
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 6.0e-25 117.1 75 78.7
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 6.0e-25 117.1 75 74.7
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 6.0e-25 117.1 75 77.3
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 7.8e-25 116.7 75 76.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.8e-25 116.7 73 80.8
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.3e-24 115.9 76 76.3
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.3e-24 115.9 75 78.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.7e-24 115.5 76 75.0
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 2.3e-24 115.2 73 79.5
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 3.0e-24 114.8 75 77.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 3.0e-24 114.8 76 75.0
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 8.6e-24 113.2 76 72.4
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 8.6e-24 113.2 78 73.1
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.5e-23 112.5 75 72.0
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 3.3e-23 111.3 75 76.0
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 3.3e-23 111.3 82 73.2
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 4.3e-23 110.9 75 72.0
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 4.3e-23 110.9 76 77.6
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 7.3e-23 110.2 76 69.7
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 7.3e-23 110.2 75 73.3
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 7.3e-23 110.2 76 73.7
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.6e-22 109.0 76 71.1
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.8e-22 108.2 76 75.0
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 6.2e-22 107.1 76 65.8
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.1e-21 104.8 69 79.7
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 3.1e-21 104.8 75 68.0
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 4.0e-21 104.4 75 70.7
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 5.2e-21 104.0 75 65.3
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 6.8e-21 103.6 85 63.5
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 6.8e-21 103.6 74 73.0
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 8.9e-21 103.2 83 66.3
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.0e-20 102.1 76 72.4
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 2.6e-20 101.7 74 66.2
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.6e-20 101.7 77 70.1
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 3.4e-20 101.3 75 69.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.4e-20 101.3 74 70.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 3.4e-20 101.3 74 66.2
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 4.4e-20 100.9 76 68.4
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.4e-20 100.9 76 68.4
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.8e-20 100.5 76 68.4
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.8e-20 100.5 78 70.5
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 7.5e-20 100.1 78 67.9
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 9.9e-20 99.8 77 67.5
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 9.9e-20 99.8 69 72.5
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 9.9e-20 99.8 77 71.4
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 9.9e-20 99.8 74 64.9
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.3e-19 99.4 76 67.1
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 2.2e-19 98.6 77 67.5
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 3.7e-19 97.8 74 63.5
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 3.7e-19 97.8 75 65.3
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 4.9e-19 97.4 83 59.0
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.9e-19 97.4 70 68.6
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 4.9e-19 97.4 83 65.1
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 6.4e-19 97.1 66 69.7
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 8.3e-19 96.7 69 65.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.2e-18 94.7 73 68.5
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 5.4e-18 94.0 85 56.5
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 5.4e-18 94.0 69 65.2
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 5.4e-18 94.0 76 64.5
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 7.1e-18 93.6 66 71.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.2e-18 93.2 70 68.6
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 1.2e-17 92.8 83 62.7
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.2e-17 92.8 74 60.8
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 2.1e-17 92.0 68 72.1
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.1e-17 92.0 71 67.6
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.1e-17 92.0 71 67.6
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.7e-17 91.7 67 73.1
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 4.6e-17 90.9 71 66.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.6e-17 90.9 71 66.2
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 6.0e-17 90.5 84 58.3
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.0e-16 89.7 76 60.5
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.7e-16 89.0 76 65.8
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 6.6e-16 87.0 56 71.4
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 9.5e-15 83.2 71 62.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 9.5e-15 83.2 65 69.2
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.2e-14 82.8 80 57.5
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.1e-14 82.0 75 56.0
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.1e-14 82.0 70 58.6
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 2.1e-14 82.0 83 56.6
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.1e-14 82.0 63 65.1
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 2.1e-14 82.0 73 57.5
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.8e-14 81.6 67 59.7
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.8e-14 81.6 65 61.5
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.6e-14 81.3 75 54.7
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 3.6e-14 81.3 73 56.2
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 4.7e-14 80.9 80 53.8
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 4.7e-14 80.9 84 57.1
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 4.7e-14 80.9 84 57.1
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 4.7e-14 80.9 65 61.5
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 6.2e-14 80.5 72 56.9
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 6.2e-14 80.5 72 56.9
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 6.2e-14 80.5 72 56.9
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 6.2e-14 80.5 72 56.9
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 6.2e-14 80.5 72 56.9
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 8.1e-14 80.1 72 56.9
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.1e-13 79.7 72 58.3
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.1e-13 79.7 75 53.3
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-13 79.7 77 57.1
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-13 79.7 84 56.0
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-13 79.7 84 56.0
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.1e-13 79.7 72 56.9
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.4e-13 79.3 76 56.6
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-13 79.0 80 56.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.8e-13 79.0 83 54.2
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.8e-13 79.0 84 54.8
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.4e-13 78.6 79 55.7
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-13 78.6 72 55.6
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-13 78.6 72 55.6
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.4e-13 78.6 72 55.6
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.4e-13 78.6 72 55.6
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.4e-13 78.6 72 55.6
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.4e-13 78.6 72 55.6
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 2.4e-13 78.6 80 56.2
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.4e-13 78.6 80 58.8
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 4.0e-13 77.8 72 55.6
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 4.0e-13 77.8 72 55.6
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 4.0e-13 77.8 72 55.6
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.0e-13 77.8 66 57.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 84 51.2
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 84 51.2
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 84 53.6
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 5.2e-13 77.4 84 51.2
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 5.2e-13 77.4 84 51.2
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 5.2e-13 77.4 84 51.2
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 6.8e-13 77.0 85 52.9
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 6.8e-13 77.0 85 52.9
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 8.9e-13 76.6 76 51.3
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.9e-13 76.6 67 62.7
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.2e-12 76.3 62 61.3
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-12 76.3 72 54.2
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-12 75.9 76 53.9
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 3.4e-12 74.7 89 49.4
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 4.4e-12 74.3 75 56.0
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 5.8e-12 73.9 82 51.2
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 7.6e-12 73.6 94 47.9
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 7.6e-12 73.6 74 48.6
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.9e-12 73.2 66 60.6
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.3e-11 72.8 75 53.3
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.4e-10 67.4 89 47.2
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 4.6e-09 64.3 75 49.3
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.5e-07 59.3 55 58.2
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 8.1e-06 53.5 96 37.5


User provided reference genes

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