Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.2e-37 157.9 80 100.0
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.5e-22 107.1 104 62.5
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.4e-21 105.9 104 64.4
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.7e-17 92.4 98 58.2
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 2.2e-17 92.0 97 56.7
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 2.2e-17 92.0 97 56.7
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 6.3e-17 90.5 98 57.1
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 6.3e-17 90.5 99 55.6
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.4e-16 89.4 98 56.1
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.8e-16 89.0 100 54.0
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.1e-16 87.8 97 55.7
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 7.0e-16 87.0 98 55.1
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 9.1e-16 86.7 98 55.1
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 9.1e-16 86.7 99 52.5
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.2e-15 86.3 97 53.6
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.2e-15 86.3 97 55.7
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.6e-15 85.9 99 52.5
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.6e-15 85.9 98 53.1
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 2.0e-15 85.5 97 51.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.0e-15 85.5 100 52.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 3.5e-15 84.7 97 53.6
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 3.5e-15 84.7 97 54.6
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 4.5e-15 84.3 98 52.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 4.5e-15 84.3 99 52.5
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 4.5e-15 84.3 98 52.0
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.5e-15 84.3 98 53.1
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 7.7e-15 83.6 97 53.6
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 7.7e-15 83.6 98 52.0
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 7.7e-15 83.6 98 53.1
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 7.7e-15 83.6 98 51.0
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 1.0e-14 83.2 98 54.1
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.0e-14 83.2 98 53.1
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.0e-14 83.2 99 51.5
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.3e-14 82.8 98 52.0
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.3e-14 82.8 95 53.7
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.3e-14 82.8 98 52.0
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.3e-14 82.8 98 52.0
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.3e-14 82.8 98 52.0
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 1.3e-14 82.8 99 51.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.3e-14 82.8 99 51.5
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.7e-14 82.4 98 53.1
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 1.7e-14 82.4 103 50.5
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 1.7e-14 82.4 104 51.0
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.7e-14 82.4 98 51.0
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 1.7e-14 82.4 98 53.1
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 1.7e-14 82.4 97 53.6
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.7e-14 82.4 99 51.5
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 2.2e-14 82.0 97 51.5
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 2.2e-14 82.0 98 51.0
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 2.2e-14 82.0 98 51.0
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 2.9e-14 81.6 104 49.0
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 3.8e-14 81.3 99 50.5
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 3.8e-14 81.3 99 50.5
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 5.0e-14 80.9 98 50.0
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 5.0e-14 80.9 98 50.0
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 5.0e-14 80.9 98 50.0
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 5.0e-14 80.9 98 50.0
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 5.0e-14 80.9 94 52.1
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 6.5e-14 80.5 97 49.5
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 6.5e-14 80.5 95 50.5
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 6.5e-14 80.5 104 50.0
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 6.5e-14 80.5 104 51.0
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 8.5e-14 80.1 98 50.0
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 8.5e-14 80.1 94 52.1
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 1.1e-13 79.7 98 50.0
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-13 79.7 102 49.0
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.1e-13 79.7 98 50.0
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.1e-13 79.7 98 50.0
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.1e-13 79.7 98 50.0
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 1.1e-13 79.7 98 46.9
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.5e-13 79.3 98 52.0
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.9e-13 79.0 104 48.1
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.9e-13 79.0 99 51.5
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.5e-13 78.6 98 50.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 3.2e-13 78.2 102 50.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.2e-13 78.2 102 50.0
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 3.2e-13 78.2 104 47.1
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.2e-13 77.8 98 49.0
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 4.2e-13 77.8 98 52.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 4.2e-13 77.8 98 50.0
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 4.2e-13 77.8 98 49.0
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 5.5e-13 77.4 98 49.0
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 5.5e-13 77.4 98 49.0
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 5.5e-13 77.4 98 48.0
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 5.5e-13 77.4 98 49.0
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 5.5e-13 77.4 98 48.0
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 7.2e-13 77.0 101 47.5
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.4e-13 76.6 102 49.0
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 9.4e-13 76.6 96 49.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 9.4e-13 76.6 96 49.0
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.2e-12 76.3 98 48.0
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 1.2e-12 76.3 98 49.0
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 1.2e-12 76.3 98 48.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 1.6e-12 75.9 98 50.0
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.6e-12 75.9 98 48.0
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.1e-12 75.5 104 46.2
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 2.1e-12 75.5 98 46.9
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 2.7e-12 75.1 97 47.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 2.7e-12 75.1 98 46.9
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 2.7e-12 75.1 98 49.0
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 3.6e-12 74.7 98 48.0
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.6e-12 74.7 94 48.9
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 3.6e-12 74.7 98 46.9
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 3.6e-12 74.7 98 46.9
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 4.7e-12 74.3 96 46.9
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 6.1e-12 73.9 98 45.9
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.1e-12 73.9 98 50.0
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 8.0e-12 73.6 98 46.9
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 8.0e-12 73.6 98 46.9
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 8.0e-12 73.6 98 46.9
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 2.3e-11 72.0 98 45.9
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.3e-11 72.0 102 48.0
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.3e-11 72.0 102 48.0
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 2.3e-11 72.0 101 44.6
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 5.2e-11 70.9 98 45.9
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 5.2e-11 70.9 93 46.2
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 5.2e-11 70.9 93 46.2
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 2.0e-10 68.9 98 45.9
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 3.3e-10 68.2 98 44.9
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 7.5e-10 67.0 98 44.9
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 4.8e-09 64.3 95 47.4
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.4e-08 62.8 95 46.3
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.8e-08 62.4 73 50.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 2.4e-08 62.0 95 46.3
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-07 58.9 95 44.2
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-07 58.9 95 44.2
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.7e-07 58.5 46 58.7
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 3.5e-07 58.2 46 63.0
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 4.5e-07 57.8 86 45.3
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 7.7e-07 57.0 46 58.7
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.3e-06 56.2 52 50.0
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 2.2e-06 55.5 46 54.3
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 2.9e-06 55.1 86 44.2


User provided reference genes

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