Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006878m.g Citrus clementina HOM05D001827 ORTHO05D001790 6.7e-93 344.4 221 100.0
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 8.3e-27 124.8 281 45.2
MELO3C014113.2 Cucumis melo HOM05D001827 ORTHO05D001790 1.7e-24 117.1 284 39.1
CsaV3_3G004170 Cucumis sativus L. HOM05D001827 ORTHO05D001790 2.5e-23 113.2 284 38.0
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 4.3e-23 112.5 276 34.8
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 5.6e-23 112.1 280 35.4
GSVIVG01014707001 Vitis vinifera HOM05D001827 ORTHO05D001790 3.1e-21 106.3 205 49.3
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 9.8e-20 101.3 280 32.1
CSS0010892 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 2.2e-19 100.1 87 67.8
CSS0027094 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 2.2e-19 100.1 87 67.8
Oeu005481.1 Olea europaea HOM05D001827 ORTHO05D001790 2.9e-19 99.8 268 43.7
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 3.7e-19 99.4 280 32.1
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 4.9e-19 99.0 280 41.1
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 8.3e-19 98.2 264 43.9
arahy.Tifrunner.gnm1.ann1.21F8WZ Arachis hypogaea HOM05D001827 ORTHO05D001790 1.1e-18 97.8 280 34.3
arahy.Tifrunner.gnm1.ann1.5CFI8R Arachis hypogaea HOM05D001827 ORTHO05D001790 2.4e-18 96.7 280 33.9
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 4.1e-18 95.9 271 32.5
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 1.6e-17 94.0 264 39.8
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 4.6e-17 92.4 87 63.2
Actinidia04995 Actinidia chinensis HOM05D001827 ORTHO05D001790 7.8e-17 91.7 71 74.6
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 1.0e-16 91.3 282 35.1
MD11G1032400 Malus domestica HOM05D001827 ORTHO05D001790 2.3e-16 90.1 71 73.2
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 2.3e-16 90.1 264 33.7
CAN.G623.22 Capsicum annuum HOM05D001827 ORTHO05D001790 3.9e-16 89.4 280 37.5
ClCG10G004390 Citrullus lanatus HOM05D001827 ORTHO05D001790 5.1e-16 89.0 288 40.3
FvH4_3g42741 Fragaria vesca HOM05D001827 ORTHO05D001790 5.1e-16 89.0 71 73.2
TWI39G0045 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 5.1e-16 89.0 71 71.8
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 6.6e-16 88.6 289 32.2
PGSC0003DMG400022271 Solanum tuberosum HOM05D001827 ORTHO05D001790 1.5e-15 87.4 264 40.5
Sopen07g033890 Solanum pennellii HOM05D001827 ORTHO05D001790 1.9e-15 87.0 280 38.2
Solyc07g065680.3 Solanum lycopersicum HOM05D001827 ORTHO05D001790 4.3e-15 85.9 280 38.9
HanXRQChr03g0080331 Helianthus annuus HOM05D001827 ORTHO05D001790 5.6e-15 85.5 214 42.5
Peaxi162Scf00139g01120 Petunia axillaris HOM05D001827 ORTHO05D001790 7.3e-15 85.1 261 41.8
Gohir.D13G135250 Gossypium hirsutum HOM05D001827 ORTHO05D001790 9.5e-15 84.7 87 59.8
Gorai.013G151600 Gossypium raimondii HOM05D001827 ORTHO05D001790 9.5e-15 84.7 87 59.8
Migut.H01749 Erythranthe guttata HOM05D001827 ORTHO05D001790 1.6e-14 84.0 276 40.9
RcHm_v2.0_Chr5g0076481 Rosa chinensis HOM05D001827 ORTHO05D001790 8.1e-14 81.6 269 36.4
Sabra16G0242100 Salix brachista HOM05D001827 ORTHO05D001790 1.4e-13 80.9 69 68.1
SGA_v2.0_scaffold42G15974 Striga asiatica HOM05D001827 ORTHO05D001790 1.8e-13 80.5 94 53.2
Hund23030 Selenicereus undatus HOM05D001827 ORTHO05D001790 2.3e-13 80.1 277 36.1
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 3.1e-13 79.7 71 66.2
RcHm_v2.0_Chr5g0076561 Rosa chinensis HOM05D001827 ORTHO05D001790 5.2e-13 79.0 66 71.2
CANSAT11G0161 Cannabis sativa HOM05D001827 ORTHO05D001790 6.8e-13 78.6 264 36.7
CiPaw.12G139200 Carya illinoinensis HOM05D001827 ORTHO05D001790 6.8e-13 78.6 82 59.8
PSO210G6911 Papaver somniferum HOM05D001827 ORTHO05D001790 6.8e-13 78.6 71 67.6
Haze_09842 Corylus avellana HOM05D001827 ORTHO05D001790 2.0e-12 77.0 71 64.8
PSO210G4928 Papaver somniferum HOM05D001827 ORTHO05D001790 2.0e-12 77.0 71 66.2
QL05p067335 Quercus lobata HOM05D001827 ORTHO05D001790 4.4e-12 75.9 274 28.8
AUR62017147 Chenopodium quinoa HOM05D001827 ORTHO05D001790 5.8e-12 75.5 69 66.7
Oeu057017.1 Olea europaea HOM05D001827 ORTHO05D008650 7.6e-12 75.1 209 33.5
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 9.9e-12 74.7 82 57.3
AUR62035660 Chenopodium quinoa HOM05D001827 ORTHO05D001790 1.3e-11 74.3 275 37.1
BraA03t10681Z Brassica rapa HOM05D001827 ORTHO05D001790 2.2e-11 73.6 89 51.7
Sed0003258 Sechium edule HOM05D001827 ORTHO05D001790 2.9e-11 73.2 88 53.4
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 3.8e-11 72.8 82 53.7
A10p13080 Brassica napus HOM05D001827 ORTHO05D001790 3.8e-11 72.8 82 53.7
C09p46840 Brassica napus HOM05D001827 ORTHO05D001790 3.8e-11 72.8 82 53.7
BolC9t57534H Brassica oleracea HOM05D001827 ORTHO05D001790 3.8e-11 72.8 82 53.7
Thhalv10012934m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 1.1e-10 71.2 89 49.4
Ca_06402_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 1.9e-10 70.5 71 53.5
Sp6g17740 Schrenkiella parvula HOM05D001827 ORTHO05D001790 2.4e-10 70.1 89 49.4
BcaNung07010 Brassica carinata HOM05D001827 ORTHO05D001790 7.1e-10 68.6 80 52.5
Phvul.008G279900 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 7.1e-10 68.6 186 31.7
CARHR269240 Cardamine hirsuta HOM05D001827 ORTHO05D001790 9.2e-10 68.2 89 48.3
Sp3g11370 Schrenkiella parvula HOM05D012956 ORTHO05D014768 9.2e-10 68.2 237 31.6
THA.LOC104815691 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 9.2e-10 68.2 221 29.4
Nitab4.5_0004583g0090 Nicotiana tabacum HOM05D001827 ORTHO05D001790 1.6e-09 67.4 264 31.8
Duzib268G1786 Durio zibethinus HOM05D001827 ORTHO05D001790 2.1e-09 67.0 87 51.7
HPP92_003811 Vanilla planifolia HOM05D001827 ORTHO05D001790 7.8e-09 65.1 54 63.0
Carub.0003s1255 Capsella rubella HOM05D012956 ORTHO05D014768 1.0e-08 64.7 237 31.2
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 1.3e-08 64.3 238 31.5
Hma1.2p1_1516F.1_g288370 Hydrangea macrophylla HOM05D001827 ORTHO05D001790 1.3e-08 64.3 71 53.5
Psat2g006880 Pisum sativum HOM05D001827 ORTHO05D001790 1.3e-08 64.3 270 28.1
Hma1.2p1_0048F.1_g027990 Hydrangea macrophylla HOM05D001827 ORTHO05D001790 1.7e-08 63.9 256 32.8
Peaxi162Scf00006g00416 Petunia axillaris HOM05D001827 ORTHO05D001790 2.3e-08 63.5 85 48.2
Migut.M01642 Erythranthe guttata HOM05D001827 ORTHO05D001790 3.0e-08 63.2 73 52.1
vmacro15728 Vaccinium macrocarpon HOM05D001827 ORTHO05D001790 3.0e-08 63.2 261 38.3
vmacro03601 Vaccinium macrocarpon HOM05D001827 ORTHO05D001790 1.5e-07 60.8 84 47.6
Prupe.4G003200 Prunus persica HOM05D001827 ORTHO05D001790 3.3e-07 59.7 282 29.4
TWI77G0847 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 3.3e-07 59.7 239 29.7
AT3G13190 Arabidopsis thaliana HOM05D012956 ORTHO05D014768 4.3e-07 59.3 250 30.0
MSTRG.14494 Avicennia marina HOM05D001827 ORTHO05D001790 4.3e-07 59.3 138 35.5
THA.LOC104811675 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 4.3e-07 59.3 290 32.4
Lalb_Chr18g0057361 Lupinus albus HOM05D001827 ORTHO05D001790 5.6e-07 58.9 253 34.0
THA.LOC104817709 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 5.6e-07 58.9 229 38.4
TAR517G0007 Trochodendron aralioides HOM05D001827 ORTHO05D001790 5.6e-07 58.9 44 77.3
A03p13780 Brassica napus HOM05D001827 ORTHO05D001790 7.3e-07 58.5 89 44.9
MBI14_g08895_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 7.3e-07 58.5 44 70.5
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 7.3e-07 58.5 284 30.3
AL8G31440 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 9.6e-07 58.2 89 44.9
Lj6A253T12 Lonicera japonica HOM05D001827 ORTHO05D001790 9.6e-07 58.2 47 63.8
PGSC0003DMG402013304 Solanum tuberosum HOM05D001827 ORTHO05D001790 9.6e-07 58.2 232 30.2
Peaxi162Scf00811g00224 Petunia axillaris HOM05D001827 ORTHO05D001790 1.2e-06 57.8 79 46.8
MSTRG.13024 Avicennia marina HOM05D001827 ORTHO05D001790 1.6e-06 57.4 56 58.9
EL10Ac4g07523 Beta vulgaris HOM05D001827 ORTHO05D001790 1.6e-06 57.4 67 52.2
CDE01G0234 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 2.1e-06 57.0 93 41.9
CARHR087780 Cardamine hirsuta HOM05D012956 ORTHO05D014768 2.8e-06 56.6 242 28.9
Eucgr.L01393 Eucalyptus grandis HOM05D001827 ORTHO05D001790 2.8e-06 56.6 264 31.4
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 2.8e-06 56.6 81 43.2
C03p16210 Brassica napus HOM05D001827 ORTHO05D001790 3.6e-06 56.2 89 42.7
BolC3t14044H Brassica oleracea HOM05D001827 ORTHO05D001790 3.6e-06 56.2 89 42.7
RcHm_v2.0_Chr5g0076551 Rosa chinensis HOM05D001827 ORTHO05D001790 4.7e-06 55.8 80 47.5
AL236U10010 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 6.2e-06 55.5 42 69.0
Eucgr.E03845 Eucalyptus grandis HOM05D001827 ORTHO05D001790 8.1e-06 55.1 264 31.4
Rhsim02G0090400 Rhododendron simsii HOM05D001827 ORTHO05D001790 8.1e-06 55.1 82 41.5


User provided reference genes

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