Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 2181.0 1097 100.0
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1636.3 1008 84.8
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1611.7 1039 80.8
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1611.3 1002 82.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1604.3 1008 82.6
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1601.6 977 83.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1600.9 1006 82.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1599.3 926 87.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1598.9 926 87.3
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1597.4 1004 81.8
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1597.0 1004 82.0
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1594.3 1006 82.1
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1592.4 908 87.6
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1592.4 1005 82.1
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1588.2 1003 81.7
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1587.4 916 88.0
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1583.5 913 86.9
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1580.5 1006 81.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1580.1 1002 81.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1578.5 916 87.7
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1575.8 990 83.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1572.0 915 86.4
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1570.8 1001 80.1
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1570.1 909 86.2
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1568.5 921 85.7
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1563.1 985 81.6
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1562.4 920 85.1
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 1002 80.9
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1560.4 1011 80.0
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1560.4 936 84.3
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1560.4 915 86.1
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1560.0 1027 78.5
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1559.3 998 80.4
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 891 87.2
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1555.0 897 86.7
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1552.7 912 86.4
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1547.7 920 84.6
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1543.1 911 85.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1542.3 915 84.7
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1538.9 907 85.1
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1536.9 908 84.8
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1536.9 1004 79.1
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1536.5 909 85.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1536.2 907 85.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1536.2 909 84.9
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1535.8 1031 78.4
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1535.8 912 84.1
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1535.4 913 83.9
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1534.2 942 82.1
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1533.1 967 82.6
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 912 83.9
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 919 83.5
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 986 80.7
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1528.1 1007 78.7
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1528.1 910 83.6
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1527.7 922 83.2
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1527.7 922 83.2
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 922 83.2
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 905 83.4
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1522.3 909 84.5
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 890 85.1
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1519.2 890 84.8
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 919 83.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 889 85.0
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 860 87.7
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 874 85.7
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 889 84.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 919 81.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 893 83.0
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1500.0 890 84.4
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 890 83.9
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1498.4 953 79.1
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 874 85.1
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 873 85.5
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 910 81.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 1055 75.1
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 906 83.3
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 908 81.7
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 892 82.8
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 908 81.5
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1488.8 896 84.2
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1487.2 1008 77.2
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1487.2 908 81.1
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 908 81.5
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 890 83.1
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 907 80.9
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 907 80.9
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 907 80.8
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1481.5 891 82.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1479.9 908 80.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 889 82.9
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 909 80.0
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 917 79.6
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 914 80.2
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 919 79.3
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 873 84.8
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 919 79.2
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 859 85.6
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 889 81.4
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 908 81.7
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 909 80.5
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1458.4 895 79.9
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1458.4 966 75.8
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1454.1 952 76.7
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1449.1 918 79.8
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1445.3 1114 70.0
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1440.2 1055 73.2
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 874 81.2
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1427.9 860 81.9
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 909 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1406.7 891 78.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1406.3 986 74.4
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1404.8 898 79.4
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1399.4 930 75.2
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1395.2 882 78.9
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1387.5 888 77.5
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1380.9 790 87.2
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1378.2 896 76.8
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 900 77.4
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 810 82.1
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 890 78.3
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1354.0 839 80.3
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 918 75.5
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 810 83.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1313.1 902 76.9
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1312.0 839 80.8
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1298.9 896 76.2
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1280.0 891 74.5
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1224.9 746 80.8
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1215.7 795 76.7
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1186.8 890 69.2
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1184.1 873 68.2
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1176.4 891 66.9
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1097.0 649 84.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.2e-304 1050.0 590 87.8
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 7.0e-300 1034.2 899 59.4
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 8.9e-271 937.6 575 81.2
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 9.5e-257 891.0 924 53.4
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.9e-218 762.7 514 77.8
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.4e-215 754.2 569 69.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.5e-213 745.3 545 71.6
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.1e-195 685.6 460 77.4
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 2.3e-186 657.1 751 49.4
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 2.3e-186 657.1 418 79.4
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 4.8e-168 596.3 476 67.0
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 7.7e-158 562.4 347 80.4
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 7.3e-140 502.7 400 65.5
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 4.7e-139 500.0 305 82.6
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.4e-114 417.9 432 55.3
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 4.8e-107 393.7 319 66.1
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-93 349.0 258 70.5
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.8e-90 338.6 239 72.4
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 5.0e-72 277.3 227 66.5
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-67 261.9 216 63.9
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.7e-56 225.7 151 73.5
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.2e-49 203.0 119 80.7
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 6.1e-46 190.7 268 44.8
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.2e-38 166.4 112 73.2
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.5e-31 142.9 85 81.2
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 3.3e-31 141.7 83 81.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.1e-29 135.2 89 71.9
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 5.2e-29 134.4 81 82.7
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 9.2e-26 123.6 95 68.4
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.1e-23 116.7 459 26.1
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.6e-22 112.8 130 51.5
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 7.1e-18 97.4 56 75.0
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 6.0e-17 94.4 62 71.0
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-12 77.8 66 60.6
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.8e-11 75.1 46 78.3
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.4e-10 73.2 57 64.9
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 9.2e-10 70.5 46 73.9
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 2.1e-09 69.3 36 83.3
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 7.8e-09 67.4 56 64.3
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.0e-08 67.0 43 74.4
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 3.9e-08 65.1 43 69.8


User provided reference genes

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