Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006727m.g Citrus clementina HOM05D005452 ORTHO05D006618 9.2e-40 166.4 82 100.0
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 9.3e-08 60.1 73 45.2
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 2.1e-07 58.9 41 73.2
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 2.1e-07 58.9 72 51.4
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 2.1e-07 58.9 41 75.6
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 2.1e-07 58.9 66 48.5
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 2.7e-07 58.5 41 75.6
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 3.5e-07 58.2 41 70.7
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 4.6e-07 57.8 87 43.7
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 4.6e-07 57.8 41 73.2
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 6.1e-07 57.4 41 73.2
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 7.9e-07 57.0 41 73.2
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 7.9e-07 57.0 41 73.2
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 7.9e-07 57.0 45 64.4
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 1.0e-06 56.6 41 70.7
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.3e-06 56.2 48 58.3
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 1.3e-06 56.2 41 73.2
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 1.3e-06 56.2 45 62.2
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.3e-06 56.2 43 67.4
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 1.3e-06 56.2 41 68.3
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 1.3e-06 56.2 72 48.6
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 1.8e-06 55.8 41 73.2
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 1.8e-06 55.8 39 74.4
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 2.3e-06 55.5 41 63.4
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 2.3e-06 55.5 41 68.3
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 2.3e-06 55.5 47 59.6
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 3.0e-06 55.1 39 76.9
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 3.0e-06 55.1 41 70.7
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 3.0e-06 55.1 41 73.2
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 3.0e-06 55.1 41 73.2
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.9e-06 54.7 49 61.2
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.9e-06 54.7 49 61.2
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.9e-06 54.7 49 61.2
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 3.9e-06 54.7 100 37.0
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 3.9e-06 54.7 41 73.2
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 5.1e-06 54.3 41 73.2
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 5.1e-06 54.3 39 69.2
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 5.1e-06 54.3 41 68.3
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 6.7e-06 53.9 37 78.4
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 6.7e-06 53.9 41 70.7
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 6.7e-06 53.9 41 63.4
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 6.7e-06 53.9 41 70.7
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 6.7e-06 53.9 66 50.0
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 6.7e-06 53.9 66 50.0
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 8.7e-06 53.5 64 51.6


User provided reference genes

Program Settings