Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006598m.g Citrus clementina HOM05D002567 ORTHO05D007435 2.3e-32 141.7 76 100.0
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 8.6e-24 113.2 64 93.8
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 3.6e-22 107.8 64 89.1
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 4.7e-22 107.5 64 87.5
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 4.7e-22 107.5 64 87.5
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 6.2e-22 107.1 64 87.5
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 6.2e-22 107.1 64 87.5
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 6.2e-22 107.1 64 87.5
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 6.2e-22 107.1 64 87.5
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 8.1e-22 106.7 64 87.5
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 8.1e-22 106.7 64 87.5
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 8.1e-22 106.7 64 89.1
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 1.4e-21 105.9 64 85.9
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 2.3e-21 105.1 64 84.4
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 4.0e-21 104.4 64 84.4
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 4.0e-21 104.4 63 85.7
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 4.0e-21 104.4 64 82.8
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 5.2e-21 104.0 64 82.8
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 6.8e-21 103.6 64 82.8
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 6.8e-21 103.6 64 84.4
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 6.8e-21 103.6 64 85.9
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 6.8e-21 103.6 64 82.8
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 8.9e-21 103.2 64 84.4
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 8.9e-21 103.2 64 85.9
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 1.2e-20 102.8 64 81.2
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.2e-20 102.8 61 88.5
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.5e-20 102.4 64 81.2
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.5e-20 102.4 64 81.2
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.5e-20 102.4 64 81.2
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.5e-20 102.4 64 81.2
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 1.5e-20 102.4 64 82.8
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 2.0e-20 102.1 63 82.5
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 2.6e-20 101.7 64 81.2
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 2.6e-20 101.7 64 82.8
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 2.6e-20 101.7 64 78.1
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 3.4e-20 101.3 64 81.2
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 3.4e-20 101.3 63 81.0
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 3.4e-20 101.3 64 79.7
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 3.4e-20 101.3 64 82.8
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 4.4e-20 100.9 63 84.1
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 4.4e-20 100.9 63 81.0
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 4.4e-20 100.9 63 84.1
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 4.4e-20 100.9 63 82.5
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 5.8e-20 100.5 63 77.8
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 7.5e-20 100.1 61 85.2
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 7.5e-20 100.1 61 85.2
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 7.5e-20 100.1 64 79.7
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 7.5e-20 100.1 64 81.2
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 9.9e-20 99.8 64 81.2
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 1.3e-19 99.4 61 82.0
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 1.3e-19 99.4 61 85.2
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 1.3e-19 99.4 64 79.7
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 1.3e-19 99.4 64 78.1
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 1.3e-19 99.4 61 82.0
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 1.7e-19 99.0 64 78.1
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.7e-19 99.0 63 81.0
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 1.7e-19 99.0 64 81.2
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 2.2e-19 98.6 62 80.6
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 2.2e-19 98.6 64 79.7
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.9e-19 98.2 63 81.0
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.9e-19 98.2 63 81.0
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 2.9e-19 98.2 64 79.7
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 2.9e-19 98.2 64 78.1
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 3.7e-19 97.8 61 82.0
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 3.7e-19 97.8 64 76.6
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 3.7e-19 97.8 63 79.4
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 4.9e-19 97.4 61 80.3
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 6.4e-19 97.1 64 78.1
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 6.4e-19 97.1 63 81.0
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 6.4e-19 97.1 68 75.0
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 6.4e-19 97.1 64 76.6
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 8.3e-19 96.7 64 76.6
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 1.1e-18 96.3 64 76.6
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 1.4e-18 95.9 63 77.8
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 1.9e-18 95.5 64 75.0
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 1.9e-18 95.5 64 71.9
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 2.4e-18 95.1 64 75.0
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 4.1e-18 94.4 63 79.4
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 4.1e-18 94.4 63 79.4
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 5.4e-18 94.0 64 75.0
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 5.4e-18 94.0 64 75.0
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 5.4e-18 94.0 64 75.0
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 5.4e-18 94.0 64 75.0
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 5.4e-18 94.0 64 75.0
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 1.2e-17 92.8 68 75.0
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 2.1e-17 92.0 64 71.9
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 2.7e-17 91.7 64 73.4
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 4.6e-17 90.9 64 73.4
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 2.3e-16 88.6 64 68.8
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 3.0e-16 88.2 64 67.2
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 4.7e-14 80.9 64 60.9
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 1.1e-13 79.7 50 80.0
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 1.1e-13 79.7 64 57.8
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 3.1e-13 78.2 64 59.4
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 6.8e-13 77.0 46 84.8
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 6.8e-13 77.0 46 84.8
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 6.8e-13 77.0 49 73.5
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 1.5e-12 75.9 64 57.8
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 5.8e-12 73.9 55 70.9
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 1.9e-07 58.9 36 77.8
Lsat_1_v5_gn_5_86321 Lactuca sativa HOM05D000295 ORTHO05D001778 1.2e-06 56.2 36 75.0


User provided reference genes

Program Settings