Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 0.0e+00 1425.2 707 100.0
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 1.8e-99 367.9 797 36.3
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 6.7e-70 269.6 723 34.0
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 8.5e-65 252.7 727 32.2
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 3.1e-59 234.2 861 31.2
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 3.4e-58 230.7 738 32.1
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 3.6e-55 220.7 830 30.4
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 6.3e-52 209.9 1059 26.3
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 9.4e-48 196.1 746 30.4
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 2.2e-44 184.9 817 29.0
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 8.5e-41 172.9 655 30.5
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 7.2e-40 169.9 906 27.5
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 1.6e-39 168.7 982 25.6
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 6.1e-39 166.8 688 28.9
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 3.0e-38 164.5 691 29.1
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 2.7e-31 141.4 339 34.5
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 3.5e-26 124.4 340 31.5
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 7.7e-26 123.2 340 31.5
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 4.2e-24 117.5 333 33.3
Sabra04G0048100 Salix brachista HOM05D003611 ORTHO05D011897 3.6e-23 114.4 670 24.5
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 8.0e-23 113.2 344 29.7
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 2.3e-22 111.7 164 45.1
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 5.2e-22 110.5 830 24.0
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 1.5e-21 109.0 1036 23.5
Potri.004G073400 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.0e-21 108.6 732 24.6
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 5.7e-21 107.1 310 33.5
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 7.5e-21 106.7 337 30.9
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.3e-20 105.9 306 31.0
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.2e-20 105.1 256 32.0
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 2.8e-20 104.8 686 27.3
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.4e-19 102.4 308 32.1
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 2.4e-19 101.7 562 26.5
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 4.1e-19 100.9 335 29.9
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 5.4e-19 100.5 294 33.0
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 5.4e-19 100.5 294 33.3
MD01G1208800 Malus domestica HOM05D010729 ORTHO05D011897 5.4e-19 100.5 755 25.0
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 7.0e-19 100.1 309 32.0
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 7.0e-19 100.1 318 29.9
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 9.2e-19 99.8 314 29.6
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 9.2e-19 99.8 368 29.6
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.2e-18 99.4 294 33.0
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 1.2e-18 99.4 389 28.8
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 1.6e-18 99.0 334 28.7
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.6e-18 99.0 286 31.5
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 2.7e-18 98.2 281 32.0
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.5e-18 97.8 293 32.8
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 5.9e-18 97.1 527 28.7
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.3e-17 95.9 294 32.3
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 1.7e-17 95.5 363 28.9
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.7e-17 95.5 492 28.9
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 1.7e-17 95.5 301 32.9
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 2.3e-17 95.1 526 27.8
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 2.3e-17 95.1 313 31.0
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 2.9e-17 94.7 297 32.7
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 6.6e-17 93.6 479 27.3
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 8.6e-17 93.2 259 33.6
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 8.6e-17 93.2 330 32.7
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 8.6e-17 93.2 294 32.3
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.5e-16 92.4 299 31.8
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.5e-16 92.4 374 29.4
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.5e-16 92.4 333 31.5
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 1.9e-16 92.0 320 30.0
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.9e-16 92.0 333 31.5
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.5e-16 91.7 308 32.1
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 3.3e-16 91.3 296 33.4
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 5.6e-16 90.5 366 30.6
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 5.6e-16 90.5 332 31.0
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 5.6e-16 90.5 479 26.9
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 5.6e-16 90.5 479 27.8
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 9.5e-16 89.7 374 30.5
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 1.6e-15 89.0 373 27.6
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 2.1e-15 88.6 313 31.0
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.8e-15 88.2 460 27.2
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 3.6e-15 87.8 152 43.4
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 4.7e-15 87.4 187 39.0
Glyma.10G230800 Glycine max HOM05D017332 ORTHO05D018498 4.7e-15 87.4 699 23.9
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 4.7e-15 87.4 343 27.7
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 6.1e-15 87.0 300 28.0
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.4e-14 85.9 460 27.0
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 1.4e-14 85.9 380 29.2
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 2.3e-14 85.1 504 26.8
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 5.2e-14 84.0 308 30.5
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 6.8e-14 83.6 374 30.2
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 8.9e-14 83.2 322 29.8
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 8.9e-14 83.2 306 30.4
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 8.9e-14 83.2 309 31.4
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 1.2e-13 82.8 276 29.7
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 1.2e-13 82.8 320 30.0
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 1.5e-13 82.4 308 30.2
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 1.5e-13 82.4 306 31.4
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 1.5e-13 82.4 308 30.5
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 2.0e-13 82.0 400 28.5
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.0e-13 82.0 238 33.2
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 2.6e-13 81.6 306 30.4
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 2.6e-13 81.6 265 28.7
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.4e-13 81.3 155 40.0
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 4.4e-13 80.9 284 29.6
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 4.4e-13 80.9 439 26.4
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 5.8e-13 80.5 166 38.6
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 7.5e-13 80.1 322 31.1
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 1.7e-12 79.0 330 29.1
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.7e-12 79.0 155 39.4
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 1.7e-12 79.0 301 29.6
RcHm_v2.0_Chr1g0378421 Rosa chinensis HOM05D010729 ORTHO05D011897 1.7e-12 79.0 749 22.7
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 2.2e-12 78.6 221 33.0
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 2.2e-12 78.6 466 23.4
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 2.9e-12 78.2 329 27.7
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 3.7e-12 77.8 327 27.5
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 4.9e-12 77.4 579 24.5
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 4.9e-12 77.4 226 32.7
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 4.9e-12 77.4 200 32.0
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 6.4e-12 77.0 111 44.1
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 6.4e-12 77.0 88 48.9
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 1.9e-11 75.5 363 24.5
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 2.4e-11 75.1 293 29.0
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 2.4e-11 75.1 266 32.7
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 2.4e-11 75.1 116 44.8
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 4.1e-11 74.3 85 50.6
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 5.4e-11 73.9 307 28.0
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 5.4e-11 73.9 338 27.2
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 5.4e-11 73.9 269 29.7
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 5.4e-11 73.9 301 29.2
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 5.4e-11 73.9 332 27.7
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 7.0e-11 73.6 373 25.5
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 3.5e-10 71.2 156 39.7
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 4.6e-10 70.9 195 33.8
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 7.8e-10 70.1 94 44.7
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 7.8e-10 70.1 80 50.0
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 7.8e-10 70.1 302 26.5
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 1.0e-09 69.7 88 45.5
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 1.0e-09 69.7 331 27.5
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 1.0e-09 69.7 371 25.1
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 1.3e-09 69.3 88 45.5
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 2.3e-09 68.6 316 26.6
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 3.9e-09 67.8 328 26.5
COL.COLO4_30305 Corchorus olitorius HOM05D003611 ORTHO05D011897 3.9e-09 67.8 236 28.8
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 3.9e-09 67.8 151 39.7
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 5.0e-09 67.4 94 41.5
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 6.6e-09 67.0 80 48.8
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 6.6e-09 67.0 88 44.3
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 6.6e-09 67.0 132 40.2
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 8.6e-09 66.6 147 33.3
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 8.6e-09 66.6 80 48.8
FAN01G1663 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.1e-08 66.2 749 23.1
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.1e-08 66.2 184 32.6
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 1.1e-08 66.2 303 26.4
FAN10G1814 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.5e-08 65.9 731 23.0
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 1.5e-08 65.9 209 33.0
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 1.9e-08 65.5 79 46.8
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.9e-08 65.5 80 47.5
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 1.9e-08 65.5 84 46.4
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 2.5e-08 65.1 147 32.7
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 2.5e-08 65.1 147 32.7
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 3.3e-08 64.7 193 33.2
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 3.3e-08 64.7 79 48.1
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 5.6e-08 63.9 268 28.4
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 7.3e-08 63.5 111 42.3
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 7.3e-08 63.5 111 42.3
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 9.5e-08 63.2 149 32.2
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 1.2e-07 62.8 80 43.8
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 2.1e-07 62.0 213 31.0
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.1e-07 62.0 213 31.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.1e-07 62.0 213 31.0
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 2.8e-07 61.6 167 36.5
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 2.8e-07 61.6 148 37.2
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 6.2e-07 60.5 146 37.0


User provided reference genes

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