Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 0.0e+00 1100.9 597 100.0
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 3.0e-212 742.3 621 70.0
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 6.9e-185 651.4 623 59.2
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 2.7e-181 639.4 623 58.3
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 4.5e-176 622.1 626 56.5
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 1.0e-175 620.9 620 58.7
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 2.2e-175 619.8 624 56.1
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 8.5e-175 617.8 621 58.0
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 2.7e-173 612.8 621 57.0
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 7.9e-173 611.3 619 56.9
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.8e-172 610.1 619 56.5
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 2.8e-170 602.8 620 56.8
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 7.7e-168 594.7 621 57.0
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.3e-167 594.0 628 55.9
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 2.2e-167 593.2 621 56.7
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 5.0e-167 592.0 619 57.4
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.7e-165 586.3 613 56.1
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 2.7e-165 586.3 612 56.9
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 8.8e-164 581.3 600 56.8
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.6e-163 579.7 607 55.7
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 7.4e-163 578.2 622 54.2
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 4.8e-162 575.5 621 53.3
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.9e-161 571.6 594 55.7
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.9e-161 571.6 594 55.7
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 4.5e-160 568.9 616 54.9
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 5.9e-160 568.5 617 55.6
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.7e-159 567.0 616 54.4
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 7.2e-158 561.6 621 53.9
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 2.7e-157 559.7 620 55.3
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.7e-156 555.1 621 53.3
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 8.8e-156 554.7 620 54.5
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.5e-155 553.9 615 52.5
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 9.7e-155 551.2 618 53.9
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.7e-154 550.4 616 54.7
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 3.7e-154 549.3 631 52.9
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 8.2e-154 548.1 621 54.6
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 5.3e-153 545.4 618 53.6
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 7.0e-153 545.0 621 55.6
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.7e-151 540.4 609 55.7
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 3.8e-151 539.3 610 56.1
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 5.5e-150 535.4 615 53.8
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.3e-146 524.2 618 50.8
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 1.3e-143 514.2 637 49.3
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.9e-142 510.4 636 49.4
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 9.4e-142 508.1 609 53.4
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 9.4e-142 508.1 622 53.1
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.6e-141 506.1 635 49.1
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 8.0e-141 505.0 524 56.1
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-139 501.1 609 53.0
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 3.4e-139 499.6 621 50.2
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.8e-138 495.7 535 57.6
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 8.3e-138 495.0 537 55.7
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.1e-137 494.6 621 53.3
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 2.4e-137 493.4 681 46.7
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.4e-137 493.4 620 52.4
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.4e-137 493.4 621 49.9
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.2e-136 491.1 626 47.9
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.3e-135 486.9 612 52.1
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 2.9e-135 486.5 732 45.4
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.6e-133 480.7 623 53.1
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 8.0e-133 478.4 633 47.2
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 1.4e-132 477.6 625 52.5
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.8e-132 477.2 624 49.5
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.8e-132 477.2 613 51.1
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 2.0e-131 473.8 615 48.3
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 2.6e-131 473.4 602 48.5
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 3.4e-131 473.0 642 47.8
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 6.3e-130 468.8 548 53.5
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 2.3e-127 460.3 571 53.6
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.5e-126 457.6 616 49.0
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 5.6e-126 455.7 591 48.4
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 4.7e-125 452.6 617 46.2
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 3.7e-122 443.0 618 46.4
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.0e-121 438.7 702 44.4
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.0e-121 438.7 622 53.2
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.6e-120 437.6 599 46.6
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 3.9e-119 433.0 627 48.0
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.5e-118 430.3 619 46.0
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 3.1e-116 423.3 591 45.2
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 7.5e-115 418.7 635 45.7
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 4.9e-114 416.0 526 49.6
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 5.4e-113 412.5 658 42.6
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 7.0e-113 412.1 691 41.0
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 3.5e-112 409.8 624 45.2
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.0e-111 406.0 618 46.0
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.5e-110 403.7 611 43.2
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.8e-109 400.2 617 42.8
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.8e-109 400.2 601 43.1
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 3.6e-109 399.8 620 43.1
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 8.1e-109 398.7 617 44.6
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.1e-108 398.3 619 49.4
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.4e-108 397.9 615 48.5
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 3.1e-108 396.7 621 42.5
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 4.0e-108 396.4 621 46.4
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 6.8e-108 395.6 610 43.1
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 1.5e-107 394.4 621 45.9
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.5e-107 392.1 622 43.4
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 7.5e-107 392.1 621 45.7
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 6.4e-106 389.0 642 42.2
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 9.2e-105 385.2 626 40.7
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 6.0e-104 382.5 590 42.9
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 1.7e-103 380.9 679 39.6
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 3.6e-101 373.2 659 41.7
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.1e-100 371.7 606 43.7
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 2.4e-100 370.5 641 39.9
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 1.5e-99 367.9 520 49.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 1.3e-98 364.8 520 48.5
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 6.4e-98 362.5 641 42.1
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 8.4e-98 362.1 519 45.7
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.4e-97 361.3 519 44.1
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 4.2e-97 359.8 590 40.0
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 5.4e-97 359.4 611 46.2
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.6e-96 356.3 560 43.9
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.3e-95 354.0 611 43.7
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 4.3e-94 349.7 646 41.3
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 5.6e-94 349.4 594 44.4
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.8e-93 347.1 285 63.5
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 6.2e-93 345.9 597 44.4
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 8.1e-93 345.5 595 44.2
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 8.1e-93 345.5 581 42.0
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 1.3e-90 338.2 595 43.9
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.3e-90 338.2 598 44.1
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.3e-90 338.2 618 42.1
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 1.7e-90 337.8 594 44.8
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 4.9e-90 336.3 598 45.2
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 4.9e-90 336.3 633 37.6
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.9e-89 334.3 618 39.5
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 4.2e-89 333.2 519 49.1
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 1.2e-88 331.6 596 43.8
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.6e-88 331.3 611 38.5
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.3e-87 328.2 602 39.4
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 2.5e-86 323.9 363 51.2
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.3e-86 323.6 267 64.0
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 4.0e-84 316.6 596 42.3
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.8e-82 310.1 433 46.9
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.6e-78 296.2 332 52.7
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 7.4e-78 295.8 610 36.1
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 2.9e-74 283.9 504 39.5
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 5.5e-73 279.6 276 53.3
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.9e-71 273.5 368 44.3
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.3e-70 270.0 323 49.2
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 2.1e-69 267.7 280 53.9
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 9.0e-68 262.3 586 36.9
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.0e-63 247.3 343 44.3
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 8.2e-61 239.2 278 49.6
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.4e-60 238.4 256 51.6
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 4.1e-60 236.9 248 53.6
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 1.2e-59 235.3 456 37.5
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.1e-57 228.8 248 50.8
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 1.4e-57 228.4 543 32.0
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 1.7e-53 214.9 397 40.3
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 8.2e-53 212.6 575 30.6
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 5.3e-52 209.9 218 51.4
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 3.4e-51 207.2 144 73.6
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 7.7e-43 179.5 287 41.1
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.9e-41 174.9 121 71.1
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 7.4e-38 162.9 207 44.9
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.2e-34 151.4 149 58.4
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 9.4e-33 146.0 121 61.2
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.4e-28 131.3 97 67.0
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 7.7e-27 126.3 372 33.9
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 2.5e-25 121.3 615 28.1
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 4.2e-25 120.6 295 31.2
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.4e-23 115.5 241 35.3
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.0e-22 111.7 262 35.5
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 2.2e-21 108.2 75 70.7
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 4.1e-20 104.0 294 32.0
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.1e-17 95.9 307 32.6
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.3e-15 88.2 99 49.5
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.2e-14 85.9 67 61.2
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.7e-13 82.0 63 68.3
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 2.2e-13 81.6 179 34.1
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.3e-10 72.4 55 69.1
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 8.6e-10 69.7 66 50.0
BraA01t01640Z Brassica rapa HOM05D002456 ORTHO05D002994 5.6e-09 67.0 155 38.1
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.0e-06 58.5 56 62.5
TAR374G0267 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.8e-06 56.2 110 37.3


User provided reference genes

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