Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.8e-79 297.7 148 100.0
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.0e-57 226.9 148 74.3
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 5.2e-57 224.6 148 72.3
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 8.8e-57 223.8 148 75.7
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 3.3e-56 221.9 148 73.6
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.7e-55 218.4 158 70.9
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 8.2e-55 217.2 162 67.9
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.4e-54 216.5 157 67.5
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.8e-54 216.1 158 67.7
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.4e-54 215.7 162 69.1
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.1e-54 215.3 151 70.9
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 4.1e-54 214.9 157 68.2
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 4.1e-54 214.9 158 67.7
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 5.3e-54 214.5 158 67.7
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 5.3e-54 214.5 158 67.7
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 7.0e-54 214.2 156 68.6
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 7.0e-54 214.2 178 62.4
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 9.1e-54 213.8 158 68.4
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.6e-53 213.0 170 64.7
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.6e-53 213.0 172 64.0
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.0e-53 212.6 167 65.3
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.0e-53 212.6 156 68.6
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.0e-53 212.6 156 66.7
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.7e-53 212.2 146 68.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 3.5e-53 211.8 145 71.7
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.5e-53 211.8 177 63.3
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 5.9e-53 211.1 162 67.9
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 5.9e-53 211.1 166 65.7
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 5.9e-53 211.1 156 66.7
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.3e-52 209.9 138 73.9
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.3e-52 209.9 156 67.9
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.7e-52 209.5 151 67.5
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.5e-51 206.5 168 62.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.5e-51 205.7 164 63.4
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.2e-51 204.9 151 69.5
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 5.5e-51 204.5 151 68.2
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 5.5e-51 204.5 155 66.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 7.2e-51 204.1 156 66.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 9.4e-51 203.8 177 61.6
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.2e-50 203.4 181 59.7
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.6e-50 203.0 151 66.9
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 2.1e-50 202.6 151 66.2
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.1e-50 202.6 174 59.8
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.1e-50 202.6 148 69.6
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.7e-50 202.2 146 65.8
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 3.6e-50 201.8 151 66.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.6e-50 201.8 151 66.2
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.6e-50 201.8 151 66.2
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.6e-50 201.8 151 66.2
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.6e-50 201.8 145 69.7
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 3.6e-50 201.8 153 68.0
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 4.7e-50 201.4 148 70.3
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 4.7e-50 201.4 168 62.5
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 4.7e-50 201.4 143 68.5
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 4.7e-50 201.4 152 66.4
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 8.0e-50 200.7 151 65.6
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 8.0e-50 200.7 153 67.3
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.4e-49 199.9 175 59.4
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.8e-49 199.5 177 59.9
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.3e-49 199.1 175 60.0
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 4.0e-49 198.4 174 60.3
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 4.0e-49 198.4 141 69.5
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 5.2e-49 198.0 160 63.8
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 5.2e-49 198.0 188 56.9
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 6.8e-49 197.6 171 60.8
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.8e-49 197.6 203 53.2
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 6.8e-49 197.6 143 68.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.4e-48 195.3 151 62.3
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.4e-48 194.9 154 63.6
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 7.5e-48 194.1 140 68.6
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.7e-47 191.8 158 60.1
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.1e-46 190.3 192 53.6
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 2.4e-46 189.1 205 50.7
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.4e-46 189.1 148 65.5
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-45 186.8 175 56.6
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.7e-45 185.7 162 60.5
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.5e-45 185.3 159 60.4
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 5.9e-45 184.5 159 61.0
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 7.7e-45 184.1 154 62.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.7e-44 183.0 214 47.7
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.9e-44 182.2 148 62.8
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 2.9e-44 182.2 151 58.9
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.8e-44 181.8 122 73.8
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.8e-44 181.8 176 56.8
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 5.0e-44 181.4 112 81.2
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 3.3e-43 178.7 170 57.6
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 5.5e-43 177.9 121 73.6
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 7.2e-43 177.6 117 76.9
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 7.2e-43 177.6 148 62.8
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.6e-42 175.3 145 63.4
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 6.1e-42 174.5 143 62.2
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 8.0e-42 174.1 157 58.6
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 3.0e-41 172.2 169 58.0
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.0e-41 171.8 124 69.4
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 8.9e-41 170.6 112 75.9
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 2.6e-40 169.1 157 56.7
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.4e-40 168.7 154 54.5
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 4.4e-40 168.3 127 66.9
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.3e-39 166.8 112 75.0
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.3e-39 166.8 109 75.2
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.7e-39 166.4 114 70.2
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.7e-39 166.4 121 67.8
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 2.2e-39 166.0 110 74.5
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 2.2e-39 166.0 112 75.0
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.7e-39 165.2 119 69.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 6.3e-39 164.5 138 60.9
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 8.3e-39 164.1 170 50.0
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-38 163.7 151 54.3
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.4e-38 163.3 109 73.4
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.8e-38 162.9 109 74.3
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 5.4e-38 161.4 125 66.4
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.4e-38 161.4 110 71.8
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.0e-38 161.0 110 70.0
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.2e-37 160.2 112 69.6
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 2.0e-37 159.5 128 66.4
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 2.9e-36 155.6 151 50.3
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 2.9e-36 155.6 151 51.0
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.8e-36 155.2 155 54.8
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.1e-35 153.7 123 62.6
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 3.6e-34 148.7 162 49.4
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.5e-32 143.3 96 70.8
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.4e-32 142.1 112 59.8
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.9e-31 139.0 148 50.7
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 4.9e-31 138.3 156 52.6
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 8.3e-31 137.5 154 48.7
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.2e-30 135.6 144 56.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 9.2e-30 134.0 145 55.2
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.3e-27 125.6 74 78.4
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 7.3e-27 124.4 148 48.6
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.2e-26 123.6 123 48.8
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.4e-25 120.2 151 46.4
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.2e-25 118.2 121 55.4
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 5.2e-25 118.2 127 54.3
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.5e-24 116.7 70 78.6
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 6.4e-23 111.3 69 79.7
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.1e-22 108.6 79 65.8
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 2.3e-20 102.8 108 50.0
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.0e-20 102.4 70 72.9
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 6.6e-20 101.3 69 71.0
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.9e-19 99.8 78 57.7
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.3e-19 98.6 71 69.0
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 5.6e-19 98.2 120 51.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.1e-18 96.3 119 51.3
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.4e-16 89.0 141 39.0
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 9.9e-16 87.4 73 53.4
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 9.9e-16 87.4 55 76.4
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 5.4e-14 81.6 135 37.0
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.4e-09 67.0 48 58.3
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.8e-09 66.6 44 72.7
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 5.8e-08 61.6 80 42.5
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 6.4e-07 58.2 36 72.2
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 8.4e-07 57.8 56 53.6
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.2e-06 55.5 33 72.7
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 7.1e-06 54.7 36 66.7
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 9.2e-06 54.3 36 58.3


User provided reference genes

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