Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 1.3e-85 319.7 166 100.0
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 3.0e-45 185.7 122 77.0
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 8.1e-43 177.6 113 82.3
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 1.8e-42 176.4 113 78.8
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 5.3e-42 174.9 111 79.3
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 6.9e-42 174.5 101 86.1
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.5e-41 173.3 112 79.5
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 2.6e-41 172.6 114 76.3
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 3.4e-41 172.2 112 76.8
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 7.6e-41 171.0 112 77.7
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 1.3e-40 170.2 112 75.9
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 1.3e-40 170.2 109 79.8
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 1.7e-40 169.9 112 80.4
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 4.9e-40 168.3 112 75.9
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 6.4e-40 167.9 114 75.4
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 6.4e-40 167.9 113 74.3
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 8.4e-40 167.5 112 75.0
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 8.4e-40 167.5 112 75.0
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.1e-39 167.2 117 73.5
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 1.4e-39 166.8 112 75.0
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.4e-39 166.8 112 75.0
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 2.4e-39 166.0 118 69.5
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 3.2e-39 165.6 112 75.0
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 3.2e-39 165.6 112 75.0
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 5.4e-39 164.9 111 76.6
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 5.4e-39 164.9 111 77.5
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 7.1e-39 164.5 111 73.0
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 7.1e-39 164.5 101 79.2
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 7.1e-39 164.5 139 67.6
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 9.3e-39 164.1 112 74.1
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 9.3e-39 164.1 112 74.1
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 1.2e-38 163.7 111 73.9
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 1.2e-38 163.7 101 78.2
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 1.6e-38 163.3 104 80.8
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 1.6e-38 163.3 111 73.9
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 1.6e-38 163.3 111 75.7
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 2.1e-38 162.9 112 72.3
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 3.5e-38 162.2 111 74.8
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 4.6e-38 161.8 116 69.8
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 6.0e-38 161.4 103 72.8
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 6.0e-38 161.4 113 72.6
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 7.9e-38 161.0 112 72.3
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 1.0e-37 160.6 112 73.2
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.0e-37 160.6 107 72.0
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.0e-37 160.6 112 74.1
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 1.3e-37 160.2 112 75.0
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 2.3e-37 159.5 101 78.2
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 3.0e-37 159.1 112 72.3
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 3.9e-37 158.7 114 71.9
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 3.9e-37 158.7 101 77.2
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 3.9e-37 158.7 104 80.8
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 6.7e-37 157.9 112 70.5
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 8.7e-37 157.5 112 71.4
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 8.7e-37 157.5 112 71.4
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 1.1e-36 157.1 113 71.7
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 1.5e-36 156.8 119 68.1
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 1.9e-36 156.4 89 84.3
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 1.9e-36 156.4 104 74.0
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.9e-36 156.4 108 76.9
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 2.5e-36 156.0 104 76.9
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 2.5e-36 156.0 143 60.1
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 3.3e-36 155.6 112 72.3
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 3.3e-36 155.6 104 76.0
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 4.3e-36 155.2 114 72.8
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 5.6e-36 154.8 101 74.3
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 7.4e-36 154.5 113 70.8
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 7.4e-36 154.5 112 70.5
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 7.4e-36 154.5 112 70.5
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 7.4e-36 154.5 103 77.7
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 9.6e-36 154.1 111 70.3
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 9.6e-36 154.1 105 74.3
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 1.3e-35 153.7 112 70.5
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 1.3e-35 153.7 103 74.8
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 1.3e-35 153.7 93 81.7
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 3.7e-35 152.1 102 74.5
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 4.8e-35 151.8 112 68.8
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 6.2e-35 151.4 112 67.9
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.1e-34 150.6 104 77.9
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 2.4e-34 149.4 114 64.9
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 3.1e-34 149.1 104 74.0
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 3.1e-34 149.1 105 72.4
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 4.0e-34 148.7 113 67.3
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 5.3e-34 148.3 101 73.3
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 6.9e-34 147.9 154 56.5
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 6.9e-34 147.9 101 73.3
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 6.9e-34 147.9 111 69.4
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.2e-33 147.1 104 72.1
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 1.2e-33 147.1 97 77.3
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 1.2e-33 147.1 101 73.3
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 1.5e-33 146.7 104 71.2
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 2.0e-33 146.4 101 71.3
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 2.0e-33 146.4 115 66.1
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 2.0e-33 146.4 115 66.1
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 2.6e-33 146.0 101 72.3
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 3.4e-33 145.6 101 71.3
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 3.4e-33 145.6 103 72.8
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 7.6e-33 144.4 101 71.3
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 7.6e-33 144.4 101 71.3
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 7.6e-33 144.4 101 72.3
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 1.0e-32 144.1 113 62.8
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 1.3e-32 143.7 111 69.4
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 1.7e-32 143.3 153 55.6
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.2e-32 142.9 104 69.2
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 3.8e-32 142.1 112 66.1
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 4.9e-32 141.7 105 72.4
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 4.9e-32 141.7 111 67.6
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 6.5e-32 141.4 93 76.3
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 8.4e-32 141.0 100 68.0
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 8.4e-32 141.0 80 83.8
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 1.1e-31 140.6 137 57.7
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 1.1e-31 140.6 90 78.9
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.1e-31 140.6 112 63.4
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 3.2e-31 139.0 102 69.6
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 3.2e-31 139.0 126 58.7
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 3.2e-31 139.0 110 68.2
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 4.2e-31 138.7 105 67.6
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 2.1e-30 136.3 79 83.5
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 6.0e-30 134.8 95 68.4
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 5.7e-28 128.3 104 61.5
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 9.6e-28 127.5 97 62.9
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 6.2e-27 124.8 106 61.3
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 1.1e-26 124.0 99 66.7
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 1.5e-25 120.2 101 56.4
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 6.5e-24 114.8 70 81.4
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 9.3e-23 110.9 92 56.5
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.3e-21 106.3 70 74.3
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 2.3e-21 106.3 102 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 3.0e-21 105.9 104 51.0
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 2.5e-20 102.8 140 50.7
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 2.8e-19 99.4 84 57.1
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 2.8e-19 99.4 100 47.0
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.8e-18 96.7 79 63.3
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.1e-18 95.9 62 82.3
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.6e-14 82.4 58 70.7
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 4.6e-14 82.0 81 55.6
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 4.6e-14 82.0 110 44.5
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.2e-11 73.2 52 69.2
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 3.6e-06 55.8 91 30.8


User provided reference genes

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