Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 5.4e-87 324.3 168 100.0
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.2e-33 147.1 174 51.7
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.6e-33 146.7 178 50.6
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.9e-31 139.8 190 46.8
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 2.7e-30 136.0 160 49.4
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 4.0e-29 132.1 176 42.0
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.4e-28 129.0 173 47.4
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 5.7e-28 128.3 146 50.7
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 5.7e-28 128.3 150 46.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.3e-27 127.1 174 45.4
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.7e-27 126.7 165 44.8
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.7e-27 126.7 165 44.8
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.7e-27 125.6 165 44.8
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.1e-26 124.0 173 46.8
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.8e-26 123.2 167 43.1
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 5.4e-26 121.7 191 44.5
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 5.4e-26 121.7 153 45.8
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.6e-25 120.2 151 43.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.0e-25 119.8 178 43.3
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 3.5e-25 119.0 147 43.5
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.0e-24 117.5 173 42.8
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.3e-24 117.1 174 42.5
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-24 115.9 150 44.7
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 3.8e-24 115.5 165 41.8
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.8e-24 115.5 167 40.7
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.8e-24 115.5 155 43.9
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-24 115.2 155 43.9
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 6.5e-24 114.8 160 44.4
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 6.5e-24 114.8 152 42.8
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 8.5e-24 114.4 149 45.6
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-23 114.0 155 43.2
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.5e-23 112.8 156 43.6
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.5e-23 112.8 170 38.8
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.2e-23 112.5 155 43.2
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 4.2e-23 112.1 185 38.4
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 4.2e-23 112.1 165 40.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 5.5e-23 111.7 182 40.7
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.2e-22 110.5 171 42.7
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.6e-22 110.2 154 43.5
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.6e-22 110.2 153 43.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.6e-22 110.2 160 42.5
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.6e-22 110.2 167 41.3
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.6e-22 110.2 150 45.3
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.6e-22 110.2 150 45.3
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.6e-22 110.2 173 37.6
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 2.1e-22 109.8 181 38.1
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.1e-22 109.8 165 43.6
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 2.1e-22 109.8 178 38.8
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 2.7e-22 109.4 158 43.0
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.6e-22 109.0 144 43.1
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 4.7e-22 108.6 164 42.1
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 8.0e-22 107.8 169 39.6
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.0e-21 107.5 183 38.8
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.0e-21 107.5 154 45.5
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 1.4e-21 107.1 156 42.3
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 2.3e-21 106.3 169 41.4
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.3e-21 106.3 157 42.0
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 4.0e-21 105.5 182 38.5
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 4.0e-21 105.5 156 41.0
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.2e-21 105.1 147 42.9
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 6.8e-21 104.8 176 39.2
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 6.8e-21 104.8 164 42.7
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 8.8e-21 104.4 131 44.3
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 8.8e-21 104.4 167 41.3
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.2e-20 104.0 150 40.7
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.5e-20 103.6 154 40.3
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 2.0e-20 103.2 135 45.2
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.0e-20 103.2 152 39.5
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 2.0e-20 103.2 150 42.0
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.6e-20 102.8 166 36.7
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 3.4e-20 102.4 160 38.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 4.4e-20 102.1 169 38.5
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 4.4e-20 102.1 159 39.6
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.4e-20 102.1 153 38.6
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.7e-20 101.7 154 42.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 5.7e-20 101.7 184 38.6
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.7e-20 101.7 153 37.9
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 7.5e-20 101.3 175 36.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.8e-20 100.9 163 41.1
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 9.8e-20 100.9 182 36.8
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 9.8e-20 100.9 152 38.2
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 1.3e-19 100.5 173 38.7
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.3e-19 100.5 166 37.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 1.7e-19 100.1 153 38.6
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.8e-19 99.4 178 36.0
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.7e-19 99.0 154 40.9
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.7e-19 99.0 173 40.5
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 4.9e-19 98.6 158 38.0
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 4.9e-19 98.6 131 45.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 4.9e-19 98.6 178 35.4
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 6.3e-19 98.2 149 39.6
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 6.3e-19 98.2 151 41.1
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 8.3e-19 97.8 189 36.0
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.1e-18 97.4 159 37.1
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.1e-18 97.4 159 37.1
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.1e-18 97.4 155 39.4
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 1.4e-18 97.1 163 36.8
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.8e-18 96.7 171 36.3
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 1.8e-18 96.7 170 38.8
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.4e-18 96.3 154 38.3
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 3.1e-18 95.9 164 37.8
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 3.1e-18 95.9 178 36.0
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 4.1e-18 95.5 176 38.1
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 4.1e-18 95.5 143 39.2
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 4.1e-18 95.5 172 37.8
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 5.4e-18 95.1 164 39.0
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 7.0e-18 94.7 136 43.4
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 7.0e-18 94.7 165 38.8
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 7.0e-18 94.7 164 37.2
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.2e-17 94.0 147 40.8
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.0e-16 90.9 146 39.7
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.7e-16 90.1 165 38.2
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.7e-16 90.1 165 38.2
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 5.0e-16 88.6 165 36.4
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 4.3e-15 85.5 151 36.4
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 7.3e-15 84.7 159 36.5
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.1e-14 83.2 134 40.3
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.4e-13 80.5 158 38.0
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.0e-13 79.0 139 40.3
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.0e-13 79.0 147 37.4
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.0e-13 79.0 147 37.4
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-12 77.0 135 39.3
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 2.4e-10 69.7 190 29.5
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.1e-10 68.9 73 47.9
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.1e-10 68.9 73 47.9
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 9.2e-10 67.8 114 39.5
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 1.2e-09 67.4 218 27.5
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-08 63.9 100 40.0
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-08 63.2 101 38.6
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.6e-08 61.2 101 37.6
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.1e-07 60.8 104 39.4
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 5.6e-07 58.5 48 54.2
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 3.6e-06 55.8 45 57.8


User provided reference genes

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