Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 8.5e-96 353.6 170 100.0
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 2.7e-65 252.3 180 72.2
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 7.2e-63 244.2 170 68.2
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 1.2e-57 226.9 172 66.9
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 1.6e-57 226.5 180 66.7
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 3.5e-57 225.3 172 68.0
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 7.7e-57 224.2 172 66.9
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 1.0e-56 223.8 173 67.1
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 1.7e-56 223.0 176 65.9
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 2.3e-56 222.6 171 66.7
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 6.6e-56 221.1 170 64.1
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 8.6e-56 220.7 173 64.2
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.5e-55 219.9 170 67.1
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 1.5e-55 219.9 170 67.1
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 5.6e-55 218.0 167 64.7
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 7.3e-55 217.6 151 68.2
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 9.5e-55 217.2 170 64.7
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 1.2e-54 216.9 173 63.0
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 1.2e-54 216.9 173 63.0
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 1.2e-54 216.9 151 72.2
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 2.8e-54 215.7 175 65.7
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 3.6e-54 215.3 165 63.6
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.4e-53 213.4 170 65.9
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 3.0e-53 212.2 176 64.2
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 3.0e-53 212.2 170 64.7
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 4.0e-53 211.8 151 67.5
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 6.8e-53 211.1 172 64.5
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 1.2e-52 210.3 174 66.1
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 1.5e-52 209.9 176 64.8
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 2.6e-52 209.1 170 65.9
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 3.4e-52 208.8 171 64.9
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 4.4e-52 208.4 180 65.0
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 9.8e-52 207.2 136 70.6
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 1.3e-51 206.8 170 62.9
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 1.3e-51 206.8 170 62.9
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 2.2e-51 206.1 130 73.1
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 2.2e-51 206.1 170 62.4
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 2.9e-51 205.7 172 64.0
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 6.4e-51 204.5 191 56.5
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 8.3e-51 204.1 170 61.8
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 1.1e-50 203.8 170 61.8
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 1.1e-50 203.8 169 63.9
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 1.4e-50 203.4 119 80.7
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 2.4e-50 202.6 173 61.8
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 2.4e-50 202.6 179 62.0
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 3.2e-50 202.2 152 65.1
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 4.1e-50 201.8 177 64.4
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 5.4e-50 201.4 171 62.0
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 7.0e-50 201.1 162 64.8
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 9.2e-50 200.7 172 61.6
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 9.2e-50 200.7 170 63.5
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 9.2e-50 200.7 170 63.5
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 9.2e-50 200.7 119 78.2
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 9.2e-50 200.7 191 55.5
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 1.2e-49 200.3 119 79.0
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 1.6e-49 199.9 171 63.2
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 2.0e-49 199.5 172 63.4
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 2.0e-49 199.5 162 61.7
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 5.9e-49 198.0 170 60.0
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 1.0e-48 197.2 176 60.8
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 1.3e-48 196.8 172 61.0
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.3e-48 196.1 162 62.3
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 2.3e-48 196.1 172 60.5
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 2.3e-48 196.1 181 58.6
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 3.0e-48 195.7 164 62.2
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 3.0e-48 195.7 128 71.9
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 3.0e-48 195.7 128 71.9
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 3.0e-48 195.7 141 69.5
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 3.9e-48 195.3 147 68.0
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 3.9e-48 195.3 162 61.7
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 3.9e-48 195.3 176 63.1
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 5.0e-48 194.9 162 60.5
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 6.6e-48 194.5 162 62.3
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 8.6e-48 194.1 159 63.5
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 8.6e-48 194.1 178 59.6
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 8.6e-48 194.1 162 60.5
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 1.9e-47 193.0 172 63.4
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 1.9e-47 193.0 143 67.1
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 1.9e-47 193.0 167 60.5
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 2.5e-47 192.6 179 60.9
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 4.3e-47 191.8 176 60.2
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 5.6e-47 191.4 173 59.5
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 1.2e-46 190.3 174 59.2
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 1.6e-46 189.9 158 62.0
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 1.6e-46 189.9 148 65.5
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 2.1e-46 189.5 174 57.5
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 3.6e-46 188.7 170 60.6
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 6.2e-46 188.0 97 85.6
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 1.0e-45 187.2 135 65.2
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 1.4e-45 186.8 157 59.9
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 8.9e-45 184.1 176 56.2
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 3.4e-44 182.2 243 44.0
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 9.8e-44 180.6 168 58.3
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.7e-43 179.9 155 60.0
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 2.2e-43 179.5 97 84.5
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 3.7e-43 178.7 181 56.9
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 2.4e-42 176.0 97 78.4
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 7.0e-42 174.5 122 66.4
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 7.0e-42 174.5 102 78.4
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 1.2e-41 173.7 102 79.4
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 2.5e-39 166.0 156 59.0
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 7.3e-39 164.5 100 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 1.2e-38 163.7 129 62.0
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 1.6e-38 163.3 124 61.3
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 6.2e-38 161.4 170 53.5
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 1.1e-37 160.6 142 61.3
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 4.0e-37 158.7 91 76.9
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 3.2e-34 149.1 88 72.7
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 2.1e-33 146.4 85 77.6
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 3.5e-33 145.6 89 77.5
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 2.5e-31 139.4 101 62.4
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 4.9e-27 125.2 115 58.3
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 7.8e-25 117.9 65 80.0
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 5.6e-23 111.7 95 58.9
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 3.1e-21 105.9 126 49.2
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 5.8e-20 101.7 126 49.2
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 1.3e-11 73.9 36 91.7
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 3.8e-11 72.4 46 73.9


User provided reference genes

Program Settings