Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006063m.g Citrus clementina HOM05D006777 ORTHO05D008360 1.2e-89 333.2 170 100.0
RcHm_v2.0_Chr4g0414361 Rosa chinensis HOM05D006777 ORTHO05D008360 2.9e-88 328.6 170 96.5
RcHm_v2.0_Chr7g0213901 Rosa chinensis HOM05D006777 ORTHO05D008360 2.9e-88 328.6 170 96.5
Glyma.08G111500 Glycine max HOM05D006777 ORTHO05D008360 6.5e-88 327.4 170 96.5
FvH4_4g13710 Fragaria vesca HOM05D006777 ORTHO05D008360 1.9e-87 325.9 170 96.5
MD04G1012700 Malus domestica HOM05D006777 ORTHO05D008360 1.9e-87 325.9 170 96.5
Glyma.05G153800 Glycine max HOM05D006777 ORTHO05D008360 2.5e-87 325.5 170 95.9
Duzib268G0333 Durio zibethinus HOM05D006777 ORTHO05D008360 5.5e-87 324.3 170 95.9
Prupe.1G158800 Prunus persica HOM05D006777 ORTHO05D008360 5.5e-87 324.3 170 95.9
Thecc.04G200300 Theobroma cacao HOM05D006777 ORTHO05D008360 5.5e-87 324.3 170 95.9
TWI53G1099 Tripterygium wilfordii HOM05D006777 ORTHO05D008360 7.2e-87 323.9 170 94.7
Lj4g0000567 Lotus japonicus HOM05D006777 ORTHO05D008360 2.1e-86 322.4 169 95.9
CiPaw.02G065600 Carya illinoinensis HOM05D006777 ORTHO05D008360 2.7e-86 322.0 170 95.3
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 3.6e-86 321.6 170 94.7
CSS0000801 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 3.6e-86 321.6 170 94.7
CDE06G2004 Ceratophyllum demersum HOM05D006777 ORTHO05D008360 3.6e-86 321.6 170 94.1
Medtr8g085290 Medicago truncatula HOM05D006777 ORTHO05D008360 4.7e-86 321.2 169 95.9
THA.LOC104804809 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 4.7e-86 321.2 170 94.7
TAR362G0671 Trochodendron aralioides HOM05D006777 ORTHO05D008360 4.7e-86 321.2 170 93.5
THA.LOC104808706 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 6.1e-86 320.9 170 94.7
CANSAT78G1417 Cannabis sativa HOM05D006777 ORTHO05D008360 7.9e-86 320.5 170 94.7
Dinv38213 Davidia involucrata HOM05D006777 ORTHO05D008360 7.9e-86 320.5 170 94.1
Migut.G00716 Erythranthe guttata HOM05D006777 ORTHO05D008360 7.9e-86 320.5 170 94.1
Manes.03G146100 Manihot esculenta HOM05D006777 ORTHO05D008360 7.9e-86 320.5 170 94.7
Atru.chr4.1633 Acer truncatum HOM05D006777 ORTHO05D008360 1.0e-85 320.1 170 94.7
Os03g0848300 Oryza sativa ssp. japonica HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 92.9
SalBow8G2353 Salvia bowleyana HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 94.1
SalBow8G2632 Salvia bowleyana HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 94.1
Sc25g0003260 Simmondsia chinensis HOM05D006777 ORTHO05D008360 1.4e-85 319.7 170 93.5
MSTRG.4231 Avicennia marina HOM05D006777 ORTHO05D008360 1.8e-85 319.3 170 93.5
BcaC02g09355 Brassica carinata HOM05D006777 ORTHO05D008360 1.8e-85 319.3 170 94.1
FAN22G2344 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.8e-85 319.3 176 93.2
Aa31LG9G3900 Aethionema arabicum HOM05D006777 ORTHO05D008360 2.3e-85 318.9 170 94.1
GSVIVG01020914001 Vitis vinifera HOM05D006777 ORTHO05D008360 3.9e-85 318.2 169 93.5
PSO063G4325 Papaver somniferum HOM05D006777 ORTHO05D008360 5.2e-85 317.8 170 93.5
PSO017G6923 Papaver somniferum HOM05D006777 ORTHO05D008360 6.7e-85 317.4 170 92.9
Solyc12g098430.2 Solanum lycopersicum HOM05D006777 ORTHO05D008360 8.8e-85 317.0 170 93.5
ATR1147G041 Amborella trichopoda HOM05D006777 ORTHO05D008360 1.1e-84 316.6 170 92.9
BcaB02g08630 Brassica carinata HOM05D006777 ORTHO05D008360 1.1e-84 316.6 170 92.9
Sopen12g033210 Solanum pennellii HOM05D006777 ORTHO05D008360 1.1e-84 316.6 170 92.9
Gohir.A02G020900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 2.0e-84 315.8 168 94.0
Gohir.D02G024900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 2.0e-84 315.8 168 94.0
Gorai.005G030800 Gossypium raimondii HOM05D006777 ORTHO05D008360 2.0e-84 315.8 168 94.0
CsaV3_2G011130 Cucumis sativus L. HOM05D006777 ORTHO05D008360 2.6e-84 315.5 170 93.5
HanXRQChr01g0022451 Helianthus annuus HOM05D006777 ORTHO05D008360 2.6e-84 315.5 170 91.8
Sed0015167 Sechium edule HOM05D006777 ORTHO05D008360 2.6e-84 315.5 170 93.5
TPR.G11902 Trifolium pratense HOM05D006777 ORTHO05D008360 2.6e-84 315.5 170 93.5
arahy.Tifrunner.gnm1.ann1.GXV5N1 Arachis hypogaea HOM05D006777 ORTHO05D008360 3.3e-84 315.1 183 89.1
AL7G42240 Arabidopsis lyrata HOM05D006777 ORTHO05D008360 4.4e-84 314.7 170 92.4
AT4G14147 Arabidopsis thaliana HOM05D006777 ORTHO05D008360 4.4e-84 314.7 170 92.4
Carub.0007s2827 Capsella rubella HOM05D006777 ORTHO05D008360 4.4e-84 314.7 170 92.4
Psat7g074160 Pisum sativum HOM05D006777 ORTHO05D008360 4.4e-84 314.7 169 94.1
Sp7g12000 Schrenkiella parvula HOM05D006777 ORTHO05D008360 5.7e-84 314.3 170 92.4
arahy.Tifrunner.gnm1.ann1.QE6BNJ Arachis hypogaea HOM05D006777 ORTHO05D008360 9.7e-84 313.5 183 88.5
MELO3C019533.2 Cucumis melo HOM05D006777 ORTHO05D008360 9.7e-84 313.5 170 92.9
Thhalv10026384m.g Eutrema salsugineum HOM05D006777 ORTHO05D008360 9.7e-84 313.5 170 92.4
Potri.017G057400 Populus trichocarpa HOM05D006777 ORTHO05D008360 9.7e-84 313.5 170 92.9
AUR62016205 Chenopodium quinoa HOM05D006777 ORTHO05D008360 1.3e-83 313.2 168 91.7
PGR083G1334 Punica granatum HOM05D006777 ORTHO05D008360 3.7e-83 311.6 170 92.4
FAN12G2838 Fragaria x ananassa HOM05D006777 ORTHO05D008360 8.2e-83 310.5 170 93.5
FAN07G2803 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.4e-82 309.7 190 86.3
HPP92_006972 Vanilla planifolia HOM05D006777 ORTHO05D008360 1.4e-82 309.7 170 90.0
DCAR_026626 Daucus carota HOM05D006777 ORTHO05D008360 1.8e-82 309.3 168 91.7
C04p41680 Brassica napus HOM05D006777 ORTHO05D008360 7.0e-82 307.4 169 92.9
Mapoly0060s0011 Marchantia polymorpha HOM05D006777 ORTHO05D008360 1.6e-81 306.2 170 88.8
Aqoxy5G00004 Aquilegia oxysepala HOM05D006777 ORTHO05D008360 4.5e-81 304.7 167 90.4
Hund11971 Selenicereus undatus HOM05D006777 ORTHO05D008360 4.5e-81 304.7 166 91.6
Zm00001eb210820 Zea mays HOM05D006777 ORTHO05D008360 4.5e-81 304.7 188 83.0
A04p08010 Brassica napus HOM05D006777 ORTHO05D008360 5.9e-81 304.3 169 91.7
Nitab4.5_0000676g0120 Nicotiana tabacum HOM05D006777 ORTHO05D008360 1.0e-80 303.5 170 90.6
Eucgr.H02768 Eucalyptus grandis HOM05D006777 ORTHO05D008360 6.5e-80 300.8 157 95.5
Pp3c3_19880 Physcomitrium patens HOM05D006777 ORTHO05D008360 1.6e-78 296.2 170 87.1
Lalb_Chr12g0205521 Lupinus albus HOM05D006777 ORTHO05D008360 2.1e-78 295.8 168 87.5
FAN17G1701 Fragaria x ananassa HOM05D006777 ORTHO05D008360 3.6e-78 295.0 175 88.6
SMO146G0157 Selaginella moellendorffii HOM05D006777 ORTHO05D008360 6.1e-78 294.3 169 87.0
Lsat_1_v5_gn_1_72060 Lactuca sativa HOM05D006777 ORTHO05D008360 1.0e-77 293.5 157 92.4
AagrBONN_evm.TU.Sc2ySwM_228.5073 Anthoceros agrestis HOM05D006777 ORTHO05D008360 7.5e-76 287.3 164 87.8
MELO3C020359.2 Cucumis melo HOM05D006777 ORTHO05D008360 2.2e-75 285.8 151 95.4
Duzib212G0541 Durio zibethinus HOM05D006777 ORTHO05D008360 2.8e-75 285.4 147 98.6
ClCG06G008050 Citrullus lanatus HOM05D006777 ORTHO05D008360 3.7e-75 285.0 162 90.1
Lalb_Chr07g0186741 Lupinus albus HOM05D006777 ORTHO05D008360 1.4e-74 283.1 150 94.0
unitig_37.g12031 Utricularia gibba HOM05D006777 ORTHO05D008360 1.4e-74 283.1 151 92.7
CsaV3_3G018320 Cucumis sativus L. HOM05D006777 ORTHO05D008360 2.7e-73 278.9 147 95.9
Sabra17G0050600 Salix brachista HOM05D006777 ORTHO05D008360 2.9e-72 275.4 147 95.2
CBR_g4477 Chara braunii HOM05D006777 ORTHO05D008360 2.5e-71 272.3 169 78.7
BolC4t25746H Brassica oleracea HOM05D006777 ORTHO05D008360 1.0e-69 266.9 139 95.0
Actinidia35856 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.4e-69 266.5 140 93.6
Nn1g07943 Nelumbo nucifera HOM05D006777 ORTHO05D008360 3.0e-69 265.4 140 93.6
Hma1.2p1_0187F.1_g082390 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 5.2e-69 264.6 139 94.2
BraA04t16489Z Brassica rapa HOM05D006777 ORTHO05D008360 8.8e-69 263.8 139 93.5
Peaxi162Scf00652g00116 Petunia axillaris HOM05D006777 ORTHO05D008360 6.3e-67 257.7 170 78.8
SGA_v2.0_scaffold14G07057 Striga asiatica HOM05D006777 ORTHO05D008360 8.3e-67 257.3 262 58.4
Nitab4.5_0000850g0170 Nicotiana tabacum HOM05D006777 ORTHO05D008360 3.5e-65 251.9 164 79.9
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 2.5e-63 245.7 128 96.9
EL10Ac3g05505 Beta vulgaris HOM05D006777 ORTHO05D008360 5.5e-63 244.6 170 77.1
Dinv27219 Davidia involucrata HOM05D006777 ORTHO05D008360 9.5e-63 243.8 170 77.1
PGSC0003DMG402004570 Solanum tuberosum HOM05D006777 ORTHO05D008360 6.1e-62 241.1 130 93.8
AUR62039283 Chenopodium quinoa HOM05D006777 ORTHO05D008360 8.0e-62 240.7 168 75.6
Haze_11625 Corylus avellana HOM05D006777 ORTHO05D008360 2.8e-59 232.3 229 62.0
Lj6A528G35 Lonicera japonica HOM05D006777 ORTHO05D008360 2.4e-58 229.2 125 93.6
SHI07424 Sapria himalayana HOM05D006777 ORTHO05D008360 1.6e-57 226.5 129 88.4
SGA_v2.0_scaffold4G02170 Striga asiatica HOM05D006777 ORTHO05D008360 2.0e-57 226.1 233 58.8
CSS0009293 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 3.5e-57 225.3 120 95.8
CSS0028561 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 3.5e-57 225.3 120 95.8
Haze_27630 Corylus avellana HOM05D006777 ORTHO05D008360 1.3e-51 206.8 169 60.4
CARHR220180 Cardamine hirsuta HOM05D006777 ORTHO05D008360 2.9e-51 205.7 110 92.7
Hma1.2p1_0187F.1_g082380 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 1.4e-50 203.4 109 93.6
QL06p026356 Quercus lobata HOM05D000003 ORTHO05D008360 2.3e-45 186.0 115 84.3
Cre06.g260800 Chlamydomonas reinhardtii HOM05D006777 ORTHO05D008360 6.4e-43 177.9 176 52.3
Hund03125 Selenicereus undatus HOM05D006777 ORTHO05D008360 5.0e-40 168.3 170 57.6
vmacro00459 Vaccinium macrocarpon HOM05D006777 ORTHO05D008360 4.1e-34 148.7 117 68.4
ECA248G0011 Erigeron canadensis HOM05D006777 ORTHO05D008360 1.2e-33 147.1 75 96.0
CAN.G767.6 Capsicum annuum HOM05D006777 ORTHO05D008360 2.3e-32 142.9 75 93.3
Sed0006533 Sechium edule HOM05D006777 ORTHO05D008360 5.1e-32 141.7 76 89.5
Lj3P402T13 Lonicera japonica HOM05D006777 ORTHO05D008360 1.2e-25 120.6 75 80.0
Cpa.g.c27575.2 Carica papaya HOM05D006777 ORTHO05D008360 5.1e-24 115.2 60 91.7
Cc00_g31310 Coffea canephora HOM05D006777 ORTHO05D008360 1.1e-23 114.0 69 85.5
Cc03_g11170 Coffea canephora HOM05D006777 ORTHO05D008360 7.1e-18 94.7 50 86.0
CSS0011736 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 1.5e-12 77.0 38 86.8
CSS0009674 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 4.2e-10 68.9 39 79.5
Lj3A409T19 Lonicera japonica HOM05D006777 ORTHO05D008360 2.5e-07 59.7 61 59.0


User provided reference genes

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