Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 4.7e-62 241.5 171 100.0
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 3.8e-35 152.1 175 52.6
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 8.4e-27 124.4 169 47.9
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 9.3e-26 120.9 181 53.6
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 1.6e-25 120.2 71 81.7
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 2.1e-25 119.8 71 87.3
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 3.5e-25 119.0 181 44.8
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 3.5e-25 119.0 181 44.2
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 4.6e-25 118.6 156 53.8
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 1.8e-24 116.7 71 81.7
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 3.9e-24 115.5 177 45.2
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 3.9e-24 115.5 178 46.1
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 5.1e-24 115.2 71 83.1
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 5.1e-24 115.2 71 83.1
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 6.7e-24 114.8 71 80.3
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 6.7e-24 114.8 71 81.7
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 6.7e-24 114.8 178 44.9
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 6.7e-24 114.8 174 44.8
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 8.7e-24 114.4 71 80.3
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 8.7e-24 114.4 71 81.7
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 1.1e-23 114.0 71 81.7
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 1.1e-23 114.0 176 45.5
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.1e-23 114.0 70 81.4
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 1.5e-23 113.6 166 44.0
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 1.5e-23 113.6 183 44.8
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 1.9e-23 113.2 71 78.9
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 1.9e-23 113.2 173 46.2
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 2.5e-23 112.8 179 45.3
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 2.5e-23 112.8 71 80.3
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 2.5e-23 112.8 70 80.0
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 3.3e-23 112.5 178 43.3
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 3.3e-23 112.5 176 44.3
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 3.3e-23 112.5 71 77.5
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 3.3e-23 112.5 71 77.5
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 3.3e-23 112.5 71 77.5
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 4.3e-23 112.1 71 77.5
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 4.3e-23 112.1 182 49.5
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 4.3e-23 112.1 69 82.6
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 4.3e-23 112.1 71 80.3
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 5.6e-23 111.7 64 85.9
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 5.6e-23 111.7 69 82.6
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 7.4e-23 111.3 71 80.3
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 9.6e-23 110.9 70 78.6
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 9.6e-23 110.9 160 46.2
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 9.6e-23 110.9 153 50.3
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 1.3e-22 110.5 70 78.6
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 1.6e-22 110.2 70 78.6
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 2.1e-22 109.8 67 83.6
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 2.1e-22 109.8 70 78.6
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 2.1e-22 109.8 70 78.6
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 2.1e-22 109.8 70 78.6
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 2.1e-22 109.8 70 77.1
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 2.1e-22 109.8 158 46.2
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 2.1e-22 109.8 179 41.9
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 2.8e-22 109.4 64 87.5
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 3.7e-22 109.0 70 77.1
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.8e-22 108.6 71 74.6
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.8e-22 108.6 71 74.6
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.8e-22 108.6 71 74.6
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 4.8e-22 108.6 175 45.1
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 4.8e-22 108.6 71 78.9
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 4.8e-22 108.6 71 77.5
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 6.2e-22 108.2 71 77.5
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 8.1e-22 107.8 72 80.6
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 1.1e-21 107.5 71 76.1
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 1.1e-21 107.5 173 41.6
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 1.4e-21 107.1 72 76.4
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 1.8e-21 106.7 71 77.5
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 2.4e-21 106.3 71 74.6
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 3.1e-21 105.9 72 75.0
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 4.0e-21 105.5 71 77.5
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 6.9e-21 104.8 65 83.1
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 6.9e-21 104.8 164 42.1
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 6.9e-21 104.8 65 83.1
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 6.9e-21 104.8 175 43.4
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 1.5e-20 103.6 73 75.3
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 1.5e-20 103.6 73 76.7
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 1.5e-20 103.6 63 81.0
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 2.0e-20 103.2 70 80.0
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 7.6e-20 101.3 63 79.4
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 7.6e-20 101.3 65 80.0
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 1.0e-19 100.9 174 39.7
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 1.0e-19 100.9 71 71.8
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 1.7e-19 100.1 72 72.2
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 1.7e-19 100.1 71 71.8
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 1.7e-19 100.1 72 73.6
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 2.2e-19 99.8 71 73.2
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 2.2e-19 99.8 71 73.2
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 3.8e-19 99.0 73 69.9
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 3.8e-19 99.0 59 84.7
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 3.8e-19 99.0 71 69.0
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 6.5e-19 98.2 65 73.8
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 1.4e-18 97.1 64 76.6
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 1.6e-17 93.6 67 71.6
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 3.5e-17 92.4 62 77.4
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 1.0e-16 90.9 65 72.3
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 1.3e-16 90.5 60 73.3
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 2.1e-14 83.2 71 59.2
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 1.5e-12 77.0 63 65.1
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 1.0e-11 74.3 56 66.1
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 4.2e-10 68.9 51 68.6
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 1.6e-09 67.0 64 56.2
CDE07G0184 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 3.0e-08 62.8 40 77.5
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 3.9e-08 62.4 50 66.0
CBR_g18894 Chara braunii HOM05D007425 ORTHO05D009334 1.5e-07 60.5 50 60.0
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 3.3e-07 59.3 46 67.4


User provided reference genes

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