Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.6e-95 352.1 178 100.0
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 8.4e-54 214.2 164 58.5
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.3e-51 206.1 164 57.3
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.1e-48 195.7 165 53.9
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 5.3e-48 194.9 152 57.2
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 9.0e-48 194.1 165 52.1
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.5e-47 193.4 164 52.4
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 2.0e-47 193.0 153 55.6
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 2.6e-47 192.6 149 55.7
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.6e-47 192.6 164 52.4
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 2.6e-47 192.6 152 55.9
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 4.5e-47 191.8 165 53.9
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 4.5e-47 191.8 153 55.6
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 9.9e-47 190.7 164 52.4
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.7e-46 189.9 151 54.3
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.7e-46 189.9 153 56.2
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.2e-46 189.5 152 54.6
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 2.2e-46 189.5 152 55.9
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 2.9e-46 189.1 167 53.9
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 3.8e-46 188.7 165 52.1
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 4.9e-46 188.3 152 55.3
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 4.9e-46 188.3 174 51.1
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 4.9e-46 188.3 162 52.5
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 8.4e-46 187.6 158 55.1
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.1e-45 187.2 158 55.1
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.1e-45 187.2 158 55.1
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.1e-45 187.2 152 53.9
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.1e-45 187.2 152 53.9
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.1e-45 187.2 152 53.3
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.4e-45 186.8 162 51.9
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.4e-45 186.8 152 54.6
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.9e-45 186.4 167 52.1
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.9e-45 186.4 151 55.0
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.4e-45 186.0 158 53.8
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 2.4e-45 186.0 152 53.3
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 2.4e-45 186.0 165 50.9
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 3.2e-45 185.7 151 53.6
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.2e-45 185.3 152 54.6
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 4.2e-45 185.3 152 52.6
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 5.5e-45 184.9 153 52.9
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 5.5e-45 184.9 158 53.2
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 5.5e-45 184.9 151 55.6
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 5.5e-45 184.9 162 53.1
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 7.1e-45 184.5 151 57.0
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.1e-45 184.5 167 53.3
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 9.3e-45 184.1 149 53.0
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 9.3e-45 184.1 166 48.8
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.2e-44 183.7 168 49.4
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 1.2e-44 183.7 153 52.3
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.6e-44 183.3 151 54.3
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.6e-44 183.3 164 49.4
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.6e-44 183.3 152 52.6
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.6e-44 183.3 152 53.3
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.6e-44 183.3 151 56.3
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.1e-44 183.0 166 51.2
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 2.1e-44 183.0 155 54.8
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 2.1e-44 183.0 152 54.6
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 2.1e-44 183.0 149 55.0
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 2.7e-44 182.6 152 53.9
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.5e-44 182.2 152 52.6
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.5e-44 182.2 152 53.3
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 3.5e-44 182.2 164 50.6
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 4.6e-44 181.8 162 51.2
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 4.6e-44 181.8 164 50.0
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 4.6e-44 181.8 147 55.1
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 7.9e-44 181.0 149 54.4
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 7.9e-44 181.0 148 53.4
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.0e-43 180.6 148 53.4
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 1.0e-43 180.6 152 52.0
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 1.0e-43 180.6 152 52.0
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.0e-43 180.6 152 52.6
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.0e-43 180.6 152 52.6
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.0e-43 180.6 152 52.6
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.3e-43 180.3 152 52.6
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 2.3e-43 179.5 148 54.7
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 3.0e-43 179.1 152 55.3
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 3.9e-43 178.7 152 55.3
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.1e-43 178.3 161 49.7
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 5.1e-43 178.3 154 51.3
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 6.7e-43 177.9 149 53.0
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 8.7e-43 177.6 153 52.9
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 8.7e-43 177.6 150 53.3
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-42 176.8 149 52.3
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-42 176.8 166 50.0
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.5e-42 176.8 133 60.2
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.9e-42 176.4 133 58.6
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.5e-42 176.0 153 49.7
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.5e-42 176.0 152 51.3
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.5e-42 176.0 146 53.4
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 3.3e-42 175.6 152 50.0
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 4.3e-42 175.3 151 54.3
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 4.3e-42 175.3 152 51.3
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 7.4e-42 174.5 160 48.8
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 9.6e-42 174.1 152 55.3
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 9.6e-42 174.1 148 50.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.6e-41 173.3 148 50.0
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 2.8e-41 172.6 147 51.7
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 2.8e-41 172.6 149 51.0
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 3.7e-41 172.2 145 50.3
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 8.2e-41 171.0 141 53.9
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 8.2e-41 171.0 150 50.0
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 8.2e-41 171.0 140 52.9
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 8.2e-41 171.0 153 51.0
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.1e-40 170.6 140 54.3
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.4e-40 170.2 133 56.4
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.4e-40 169.5 152 50.7
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 9.0e-40 167.5 151 49.0
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 9.0e-40 167.5 158 48.1
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.6e-39 166.0 152 51.3
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.6e-39 166.0 152 51.3
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 2.6e-39 166.0 150 50.7
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.7e-38 163.3 140 50.0
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.2e-38 162.9 140 52.1
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.4e-37 160.2 148 49.3
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 4.2e-37 158.7 159 47.8
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.5e-37 158.3 137 49.6
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 1.2e-36 157.1 150 46.0
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.8e-35 153.3 165 42.4
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 3.9e-35 152.1 122 54.9
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 3.3e-34 149.1 167 47.9
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 4.3e-34 148.7 126 50.8
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.6e-33 146.7 167 47.3
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 6.3e-33 144.8 125 56.0
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 3.1e-32 142.5 147 44.9
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.1e-32 142.5 142 45.1
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 3.1e-32 142.5 152 44.1
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 6.9e-32 141.4 160 43.8
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.0e-30 137.5 111 55.0
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.0e-30 137.5 109 53.2
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 1.7e-30 136.7 168 38.7
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 3.8e-30 135.6 156 44.2
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.1e-29 134.0 162 42.6
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 8.8e-27 124.4 104 56.7
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 9.7e-26 120.9 147 40.1
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 2.8e-25 119.4 165 38.2
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.2e-23 114.0 156 38.5
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 4.5e-23 112.1 87 62.1
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 5.9e-23 111.7 88 60.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 2.2e-22 109.8 155 36.1
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 7.2e-21 104.8 88 54.5
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 7.2e-21 104.8 88 52.3
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 7.2e-21 104.8 99 49.5
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 7.9e-20 101.3 83 49.4
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 8.8e-19 97.8 165 34.5
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.1e-18 97.4 168 32.1
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 5.7e-18 95.1 80 60.0
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.0e-15 86.7 68 51.5
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 1.7e-14 83.6 88 43.2
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 6.5e-14 81.6 69 49.3
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 8.5e-14 81.3 88 42.0
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.0e-11 74.3 68 47.1
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.0e-11 74.3 83 47.0
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 5.7e-10 68.6 61 41.0
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.1e-08 62.8 86 39.5
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.6e-07 60.5 54 51.9


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