Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 9.0e-139 496.9 248 100.0
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 1.9e-112 409.5 245 81.6
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 2.3e-110 402.5 239 81.6
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 2.0e-109 399.4 239 81.2
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 9.7e-109 397.1 241 80.1
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 3.7e-108 395.2 241 80.1
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 7.0e-107 391.0 239 79.5
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 7.0e-107 391.0 245 78.8
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.7e-106 389.0 241 79.3
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 1.3e-105 386.7 241 78.8
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 1.3e-105 386.7 246 76.8
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.2e-105 386.0 241 78.8
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 2.9e-105 385.6 242 77.7
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 5.0e-105 384.8 245 77.6
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 5.0e-105 384.8 246 76.0
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 6.5e-105 384.4 241 79.3
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 8.5e-105 384.0 249 77.5
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 2.5e-104 382.5 245 76.7
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 2.5e-104 382.5 242 77.7
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 9.4e-104 380.6 239 76.2
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.2e-103 380.2 241 78.0
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.1e-103 379.4 245 77.1
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.1e-103 379.4 245 77.1
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 4.7e-103 378.3 242 76.0
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 1.8e-102 376.3 252 73.8
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 2.3e-102 375.9 231 78.8
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 5.2e-102 374.8 239 77.0
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 6.8e-102 374.4 248 74.6
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 1.5e-101 373.2 244 74.6
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 2.0e-101 372.9 231 77.5
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 1.3e-100 370.2 239 74.9
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 1.7e-100 369.8 238 74.4
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 2.2e-100 369.4 246 74.0
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 3.7e-100 368.6 239 76.2
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 6.3e-100 367.9 250 73.2
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 6.3e-100 367.9 242 74.4
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.1e-99 367.1 250 73.2
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 1.1e-99 367.1 243 74.5
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 5.4e-99 364.8 236 74.2
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 1.6e-98 363.2 239 73.6
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 2.0e-98 362.8 236 73.7
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 3.5e-98 362.1 250 72.8
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 4.5e-98 361.7 236 74.6
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 4.5e-98 361.7 247 71.7
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 4.5e-98 361.7 239 74.9
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 5.9e-98 361.3 239 73.6
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 5.9e-98 361.3 242 73.6
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 1.3e-97 360.1 237 73.8
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 1.7e-97 359.8 242 72.3
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 6.6e-97 357.8 239 71.5
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 2.5e-96 355.9 247 71.7
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 7.2e-96 354.4 237 73.0
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 2.8e-95 352.4 238 72.7
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 3.6e-95 352.1 240 72.5
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 8.0e-95 350.9 239 71.1
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.0e-94 350.5 218 77.5
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 1.8e-94 349.7 239 72.4
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 4.0e-94 348.6 241 72.6
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 5.2e-94 348.2 239 72.0
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 6.8e-94 347.8 236 72.5
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 2.6e-93 345.9 237 70.9
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 3.4e-93 345.5 308 60.1
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 4.4e-93 345.1 239 72.8
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 5.7e-93 344.7 236 71.2
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 9.8e-93 344.0 239 72.4
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 9.8e-93 344.0 239 72.8
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 1.7e-92 343.2 218 75.2
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 2.8e-92 342.4 242 69.8
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 8.3e-92 340.9 218 74.8
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.8e-91 339.7 250 70.0
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 2.4e-91 339.3 242 69.0
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 9.2e-91 337.4 236 70.8
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 9.2e-91 337.4 236 69.1
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 2.7e-90 335.9 224 73.2
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 2.7e-90 335.9 238 71.0
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 3.5e-90 335.5 237 69.6
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 1.5e-88 330.1 240 68.8
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 1.5e-88 330.1 220 75.0
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 1.9e-88 329.7 228 72.8
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 2.5e-88 329.3 230 71.3
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 2.5e-88 329.3 230 71.3
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 2.5e-88 329.3 230 71.3
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 5.6e-88 328.2 232 72.0
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 5.6e-88 328.2 232 72.0
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 5.6e-88 328.2 242 65.7
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 9.5e-88 327.4 220 74.1
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 1.2e-87 327.0 199 79.9
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 2.8e-87 325.9 220 74.1
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 3.6e-87 325.5 207 75.4
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 6.1e-87 324.7 228 70.6
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 1.8e-86 323.2 294 57.8
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 2.3e-86 322.8 232 69.8
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 4.0e-86 322.0 195 78.5
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 4.4e-85 318.5 195 76.9
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 1.9e-83 313.2 195 76.9
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 3.2e-83 312.4 223 64.1
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 7.8e-82 307.8 238 62.2
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 1.0e-81 307.4 218 68.8
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 5.0e-81 305.1 206 71.8
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 2.5e-80 302.8 239 62.8
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 9.5e-80 300.8 189 76.2
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 1.2e-77 293.9 242 62.8
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 3.7e-76 288.9 199 71.9
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.6e-74 283.5 209 66.5
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 3.5e-74 282.3 196 69.9
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 5.1e-73 278.5 194 67.0
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 5.1e-73 278.5 204 69.6
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 6.8e-70 268.1 280 57.1
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 3.0e-65 252.7 236 55.5
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 4.3e-64 248.8 220 53.6
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.2e-61 240.7 144 78.5
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 2.6e-61 239.6 228 55.7
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 6.0e-58 228.4 141 78.7
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 3.0e-57 226.1 193 58.0
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 3.9e-57 225.7 185 58.4
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 1.1e-56 224.2 240 49.2
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.5e-53 213.8 127 78.7
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 2.1e-34 150.2 184 44.0
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 3.7e-31 139.4 94 72.3
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 1.2e-26 124.4 208 37.0
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 3.9e-25 119.4 276 33.3
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 7.7e-21 105.1 168 38.7
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 7.2e-19 98.6 184 35.9
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 3.7e-15 86.3 47 83.0
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 5.3e-14 82.4 48 79.2
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 9.1e-14 81.6 61 60.7
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 1.7e-07 60.8 34 76.5
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 4.1e-06 56.2 251 27.9


User provided reference genes

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