Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 4.3e-162 574.7 310 100.0
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.5e-119 431.8 310 73.2
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.3e-118 430.3 310 72.9
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 4.9e-118 428.3 308 73.1
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 9.3e-117 424.1 308 72.1
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.3e-115 420.2 308 72.4
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.9e-115 418.7 309 71.2
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 5.6e-114 414.8 308 73.1
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.4e-112 409.5 311 69.5
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 3.1e-112 409.1 307 71.0
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.5e-111 406.8 311 69.1
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 2.6e-111 406.0 314 70.4
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 5.8e-111 404.8 253 80.6
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 5.8e-111 404.8 323 67.8
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 7.6e-111 404.4 311 68.8
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 7.6e-111 404.4 311 68.8
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.3e-110 403.7 309 68.9
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 6.5e-110 401.4 308 69.2
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 1.1e-109 400.6 308 68.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.4e-109 400.2 309 68.6
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 3.2e-109 399.1 308 72.1
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 4.2e-109 398.7 343 63.3
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 5.5e-109 398.3 308 68.5
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.2e-108 397.1 308 70.1
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 4.6e-108 395.2 308 68.2
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 6.0e-108 394.8 309 68.9
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.5e-106 390.2 307 68.1
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 2.5e-106 389.4 309 66.3
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 2.5e-106 389.4 307 66.4
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 5.7e-106 388.3 308 66.9
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 7.4e-106 387.9 307 66.4
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 2.2e-105 386.3 308 66.6
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 3.7e-105 385.6 318 66.0
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 3.7e-105 385.6 308 70.1
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.4e-104 383.6 306 66.0
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 6.9e-104 381.3 313 67.7
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 9.0e-104 380.9 308 65.3
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 1.5e-103 380.2 308 65.3
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 2.6e-103 379.4 308 65.3
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 5.9e-103 378.3 308 62.0
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 1.3e-102 377.1 307 64.2
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 1.7e-102 376.7 308 62.7
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.9e-102 375.9 268 72.8
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 2.9e-102 375.9 307 62.5
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.8e-102 375.6 311 68.8
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 3.2e-101 372.5 313 66.8
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 3.2e-101 372.5 309 63.8
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 4.2e-101 372.1 309 63.1
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 7.2e-101 371.3 309 63.1
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 6.1e-100 368.2 309 63.4
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 6.1e-100 368.2 311 63.7
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 2.3e-99 366.3 311 63.0
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 3.9e-99 365.5 308 62.0
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 3.9e-99 365.5 308 62.0
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 3.9e-99 365.5 312 64.7
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 6.7e-99 364.8 308 64.0
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 1.5e-98 363.6 307 61.2
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 5.7e-98 361.7 307 64.2
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 4.8e-97 358.6 309 62.5
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 6.3e-97 358.2 314 60.8
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 1.8e-96 356.7 310 62.9
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 1.8e-96 356.7 316 61.4
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 1.8e-96 356.7 309 64.4
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 3.1e-96 355.9 316 60.4
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 3.1e-96 355.9 314 60.5
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 3.1e-96 355.9 314 60.5
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 5.3e-96 355.1 309 61.2
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 6.9e-96 354.8 316 60.4
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 6.9e-96 354.8 316 60.4
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 1.2e-95 354.0 307 62.9
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 2.6e-95 352.8 308 60.4
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 4.5e-95 352.1 316 59.5
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 5.0e-94 348.6 310 59.7
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 6.5e-94 348.2 315 60.0
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 8.5e-94 347.8 308 62.7
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 5.5e-93 345.1 315 59.4
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 7.2e-93 344.7 316 59.2
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 1.2e-92 344.0 312 60.6
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 6.7e-91 338.2 308 64.0
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 1.7e-89 333.6 315 58.4
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 1.1e-88 330.9 297 60.6
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 1.4e-88 330.5 309 61.8
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 2.4e-88 329.7 307 56.7
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 3.1e-88 329.3 265 63.0
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 1.2e-87 327.4 317 58.7
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.6e-87 326.2 310 60.6
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 1.7e-86 323.6 307 56.0
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 2.7e-84 316.2 264 61.0
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 8.0e-84 314.7 307 59.0
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.9e-83 312.4 203 79.3
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 4.4e-82 308.9 312 58.0
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.4e-82 308.9 259 62.5
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 2.2e-81 306.6 257 61.9
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 8.2e-81 304.7 270 61.9
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.4e-80 303.9 309 56.0
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 7.0e-80 301.6 308 53.9
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 1.4e-75 287.3 203 70.9
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 5.3e-72 275.4 308 51.9
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 3.5e-71 272.7 320 50.3
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 3.6e-68 262.7 250 58.0
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 8.3e-65 251.5 317 46.4
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 7.7e-63 245.0 230 55.7
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.2e-58 231.1 309 45.3
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 4.4e-50 202.6 190 63.2
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 4.4e-50 202.6 210 58.6
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 9.8e-50 201.4 134 77.6
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 1.8e-48 197.2 302 42.1
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 2.4e-48 196.8 268 42.5
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 7.0e-48 195.3 269 44.2
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 6.0e-47 192.2 314 41.4
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 2.5e-45 186.8 263 42.6
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.4e-40 171.0 309 39.8
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 3.5e-39 166.4 264 40.2
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 5.0e-38 162.5 119 68.9
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.1e-37 161.4 144 62.5
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.1e-37 161.4 272 37.5
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.3e-35 153.7 221 43.0
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 3.1e-35 153.3 124 63.7
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.6e-34 150.2 177 49.2
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 9.9e-34 148.3 194 45.9
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.3e-33 147.9 311 36.3
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 2.4e-32 143.7 110 70.0
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 9.5e-29 131.7 96 66.7
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 1.3e-25 121.3 120 57.5
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 9.2e-24 115.2 150 43.3
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 6.6e-22 109.0 161 44.1
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 2.5e-21 107.1 132 47.0
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 3.3e-21 106.7 102 55.9
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 4.7e-20 102.8 68 69.1
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 1.1e-19 101.7 102 66.7
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 3.2e-16 90.1 114 49.1
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.4e-08 64.7 101 40.6


User provided reference genes

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