Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 1.3e-182 642.9 315 100.0
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 1.7e-166 589.3 312 90.4
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 2.4e-160 568.9 314 86.0
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 3.4e-159 565.1 317 85.5
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 7.6e-159 563.9 314 86.0
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 1.0e-158 563.5 314 86.0
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 2.2e-158 562.4 314 86.0
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 8.5e-158 560.5 314 85.7
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 9.3e-157 557.0 316 84.8
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 3.6e-156 555.1 317 86.1
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 8.7e-155 550.4 314 84.1
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 1.1e-154 550.1 320 82.8
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 4.3e-154 548.1 315 83.8
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 9.7e-154 547.0 326 82.2
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 1.3e-153 546.6 314 83.4
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 2.2e-153 545.8 318 83.0
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.2e-153 545.8 318 83.0
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 3.7e-153 545.0 318 83.0
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 4.8e-153 544.7 318 82.7
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 1.8e-152 542.7 318 82.7
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 4.1e-152 541.6 316 82.3
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 9.1e-152 540.4 314 83.1
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 1.2e-151 540.0 317 83.9
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 5.9e-151 537.7 316 82.3
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 1.0e-150 537.0 325 81.5
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 1.0e-150 537.0 317 81.7
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 2.2e-150 535.8 325 81.5
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 2.2e-150 535.8 326 81.3
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 3.8e-150 535.0 317 82.0
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 6.5e-150 534.3 315 82.9
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 8.5e-150 533.9 294 85.4
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 1.1e-149 533.5 325 80.9
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 1.4e-149 533.1 326 80.7
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 1.6e-148 529.6 327 80.1
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 1.6e-148 529.6 315 82.5
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 2.1e-148 529.3 315 80.6
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 3.6e-148 528.5 327 79.8
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 4.6e-148 528.1 315 80.3
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 4.6e-148 528.1 318 81.8
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 6.1e-148 527.7 315 81.6
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 1.4e-147 526.6 327 79.5
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 1.4e-147 526.6 327 79.5
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 1.4e-147 526.6 312 81.1
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 1.8e-147 526.2 328 79.6
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 1.8e-147 526.2 328 79.6
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 3.9e-147 525.0 327 79.5
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 1.5e-146 523.1 319 81.2
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 2.0e-146 522.7 324 81.2
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 2.6e-146 522.3 323 80.5
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 6.3e-145 517.7 308 82.8
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.1e-144 516.9 318 80.2
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 3.1e-144 515.4 316 81.0
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 5.3e-144 514.6 314 80.9
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 9.1e-144 513.8 316 77.2
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 4.5e-143 511.5 320 79.4
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 7.7e-143 510.8 319 79.6
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 7.7e-143 510.8 319 79.6
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 1.7e-142 509.6 328 77.1
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 6.5e-142 507.7 321 78.2
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 5.5e-141 504.6 333 77.2
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 1.6e-140 503.1 320 78.1
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 3.6e-140 501.9 281 85.8
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 2.3e-139 499.2 282 85.5
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 3.0e-139 498.8 321 77.9
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 1.7e-137 493.0 283 85.5
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 3.7e-137 491.9 316 78.5
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 1.6e-135 486.5 314 78.3
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 1.0e-134 483.8 321 75.7
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 5.0e-134 481.5 317 76.3
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 1.3e-129 466.8 384 64.6
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 1.4e-128 463.4 420 61.0
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 6.5e-126 454.5 317 73.5
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 9.4e-125 450.7 282 80.5
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 2.7e-124 449.1 325 71.4
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 1.4e-123 446.8 261 83.1
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 2.6e-122 442.6 346 67.3
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 4.4e-122 441.8 266 82.3
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 7.5e-122 441.0 254 81.9
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 9.8e-122 440.7 314 68.2
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 4.8e-121 438.3 284 76.8
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 3.1e-120 435.6 292 73.3
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 1.6e-119 433.3 264 79.9
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 6.5e-118 427.9 250 82.4
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 1.9e-117 426.4 295 72.5
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 4.7e-116 421.8 258 79.5
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 4.0e-115 418.7 308 65.6
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.8e-112 409.8 300 72.3
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 2.0e-111 406.4 315 67.6
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 2.9e-110 402.5 309 66.7
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 4.7e-108 395.2 314 66.2
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 5.2e-107 391.7 309 61.5
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 2.0e-106 389.8 241 78.8
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 9.2e-104 380.9 643 38.9
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 1.7e-102 376.7 299 59.5
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 2.8e-100 369.4 296 59.1
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 1.1e-99 367.5 283 69.6
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.9e-93 346.7 313 61.7
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 1.9e-93 346.7 264 64.4
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.1e-88 330.9 313 57.5
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 9.2e-88 327.8 205 76.6
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 3.1e-83 312.8 332 56.0
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 1.5e-82 310.5 235 70.2
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 6.4e-81 305.1 191 78.5
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 2.6e-74 283.1 188 68.1
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 1.2e-71 274.2 191 73.8
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 2.5e-69 266.5 216 59.3
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.6e-68 263.8 159 79.9
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 3.2e-64 249.6 317 48.6
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 7.1e-64 248.4 240 57.9
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 6.0e-63 245.4 163 72.4
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 6.7e-62 241.9 153 74.5
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 3.5e-55 219.5 145 73.8
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 7.9e-55 218.4 175 61.7
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.0e-46 191.4 131 73.3
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 2.2e-44 183.7 101 84.2
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 8.8e-38 161.8 90 84.4
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 1.3e-33 147.9 272 36.8
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 3.2e-32 143.3 92 71.7
PRCOL_00005697 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 2.1e-31 140.6 275 32.0
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 4.5e-26 122.9 80 75.0
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 2.2e-17 94.0 373 24.7
SEGI_18851 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 1.4e-14 84.7 59 67.8
MD15G1048200 Malus domestica HOM05D006118 ORTHO05D007750 5.2e-14 82.8 50 76.0
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 8.8e-14 82.0 153 37.9
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 2.6e-13 80.5 54 77.8
HPP92_016211 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.1e-08 65.1 55 60.0
MSTRG.1710 Avicennia marina HOM05D006118 ORTHO05D007750 4.2e-08 63.2 66 48.5


User provided reference genes

Program Settings