Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.5e-217 759.2 374 100.0
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 3.8e-173 611.7 377 79.0
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 3.8e-173 611.7 372 79.3
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 6.5e-173 610.9 398 75.4
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.9e-172 609.4 382 79.1
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 5.5e-172 607.8 373 80.2
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 7.9e-171 604.0 377 78.8
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.4e-170 603.2 379 78.9
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.8e-170 602.8 379 78.9
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.3e-170 602.4 377 78.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 5.1e-170 601.3 376 79.0
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 8.8e-170 600.5 372 78.0
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.1e-169 600.1 379 78.1
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.9e-169 599.4 381 77.4
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 3.3e-169 598.6 380 78.2
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.7e-169 597.8 379 77.6
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.3e-168 596.7 381 79.3
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 6.3e-168 594.3 379 77.8
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-167 593.6 379 77.8
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.4e-167 593.2 381 77.4
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.8e-167 592.8 379 78.4
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.4e-167 592.4 375 77.6
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 3.1e-167 592.0 379 77.6
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 5.3e-167 591.3 344 82.6
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 9.1e-167 590.5 379 77.3
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.5e-166 589.7 378 76.7
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.0e-166 589.3 381 76.6
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 3.4e-166 588.6 378 77.2
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 3.4e-166 588.6 378 76.2
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.9e-165 585.5 372 78.2
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 5.0e-165 584.7 375 77.1
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 5.0e-165 584.7 381 76.1
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.4e-164 583.2 373 76.4
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.4e-164 583.2 376 78.2
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 3.2e-164 582.0 374 75.7
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 5.5e-164 581.3 401 73.8
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 5.5e-164 581.3 385 75.3
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.2e-164 580.9 393 74.3
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.6e-163 579.7 381 74.5
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 2.7e-163 578.9 375 77.1
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.3e-162 575.9 373 75.6
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 3.0e-162 575.5 379 74.4
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 5.1e-162 574.7 375 75.7
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 8.8e-162 573.9 368 77.2
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.5e-161 573.2 383 74.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.3e-161 572.0 382 75.1
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 3.3e-161 572.0 320 84.4
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 5.7e-161 571.2 378 75.9
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 9.7e-161 570.5 376 75.3
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 9.7e-161 570.5 376 74.5
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 9.7e-161 570.5 377 76.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.3e-160 570.1 373 76.4
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.7e-160 569.7 379 75.7
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.7e-160 569.7 320 84.1
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.7e-160 568.5 380 75.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 4.8e-160 568.2 376 74.5
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.1e-159 567.0 319 84.6
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.4e-159 566.6 376 73.9
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.4e-159 566.6 377 72.9
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.8e-159 566.2 376 76.6
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 7.0e-159 564.3 373 75.6
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 9.1e-159 563.9 379 73.6
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 3.4e-158 562.0 364 75.8
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.4e-158 562.0 374 73.8
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 7.7e-158 560.8 375 71.7
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.0e-157 560.5 316 81.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.3e-157 560.1 373 72.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.3e-157 560.1 384 71.9
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 2.2e-157 559.3 401 70.6
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 2.9e-157 558.9 379 73.4
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.9e-157 558.9 382 72.0
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 5.0e-157 558.1 378 72.2
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 6.5e-157 557.8 375 71.5
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.1e-156 557.0 382 71.5
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.4e-156 556.6 383 70.2
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.4e-156 556.6 320 82.5
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 4.2e-156 555.1 378 71.7
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 4.2e-156 555.1 379 71.5
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-155 553.1 379 72.0
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.6e-155 553.1 379 72.0
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.6e-155 553.1 373 72.1
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.1e-155 552.7 372 74.5
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.0e-154 550.4 382 69.6
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 3.0e-154 548.9 378 71.2
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 5.2e-154 548.1 307 84.4
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 8.8e-154 547.4 374 72.2
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 8.8e-154 547.4 374 72.2
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-153 547.0 370 70.5
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.6e-153 545.8 318 79.9
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 4.4e-153 545.0 370 70.3
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 4.4e-153 545.0 318 80.5
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 2.4e-151 539.3 385 72.5
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 3.1e-151 538.9 303 81.2
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 4.1e-151 538.5 318 79.9
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.6e-150 536.6 360 73.3
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.6e-150 535.8 382 67.0
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 5.9e-150 534.6 382 67.0
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.0e-149 533.9 345 75.7
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.7e-149 533.1 319 77.1
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.2e-149 532.7 382 66.8
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 6.5e-149 531.2 350 75.7
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 8.5e-149 530.8 318 76.4
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.2e-148 527.7 308 78.9
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.7e-147 525.8 360 69.7
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.4e-146 523.5 360 69.4
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 4.0e-146 521.9 377 69.8
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.6e-145 519.2 378 66.9
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 9.7e-145 517.3 382 64.7
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 6.3e-144 514.6 366 69.7
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.8e-143 513.1 341 73.6
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.4e-143 512.7 319 74.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.4e-143 512.7 321 73.8
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 7.7e-142 507.7 329 73.9
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.0e-141 507.3 316 73.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 5.5e-140 501.5 377 66.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.6e-139 500.0 319 73.4
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 6.1e-139 498.0 349 72.2
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.4e-138 496.9 303 74.6
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.8e-138 496.5 337 70.9
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 2.3e-133 479.6 324 72.5
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 3.8e-133 478.8 349 70.5
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 8.6e-133 477.6 378 64.0
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.5e-132 476.9 320 74.1
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.9e-132 476.5 322 70.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 6.1e-131 471.5 349 70.8
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 8.3e-128 461.1 257 81.7
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 8.3e-128 461.1 257 81.7
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 9.2e-127 457.6 241 89.6
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-126 456.8 373 62.5
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.5e-124 450.3 303 68.3
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 4.7e-123 445.3 292 66.4
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.0e-122 444.1 324 71.6
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 4.9e-120 435.3 318 62.3
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 4.6e-118 428.7 302 65.9
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 2.3e-117 426.4 293 73.4
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 2.6e-113 412.9 325 59.1
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.5e-108 397.1 320 56.9
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 7.3e-108 394.8 268 75.0
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 4.9e-104 382.1 300 60.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 6.4e-104 381.7 378 53.7
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.1e-102 376.7 233 73.8
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.0e-101 372.9 233 77.7
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 4.2e-95 352.4 197 83.2
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 5.4e-95 352.1 229 75.5
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.4e-95 352.1 197 83.8
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.4e-90 337.4 216 75.9
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.4e-89 332.8 233 67.8
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 3.5e-78 296.2 199 75.9
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 2.4e-74 283.5 358 43.9
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-73 280.4 343 46.4
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 3.8e-72 276.2 219 63.5
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.9e-68 263.8 299 48.2
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.3e-68 263.1 319 43.6
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 3.3e-68 263.1 308 44.8
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.8e-53 214.2 153 71.2
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.7e-51 207.6 114 80.7
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 4.1e-50 203.0 182 64.3
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.8e-43 180.3 344 35.2
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 6.1e-38 162.5 158 58.2
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-37 161.8 94 85.1
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-37 161.4 92 85.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 5.2e-37 159.5 94 83.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 6.7e-37 159.1 158 57.6
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.5e-36 157.9 92 83.7
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 2.2e-35 154.1 131 63.4
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 3.8e-32 143.3 97 77.3
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 2.1e-30 137.5 77 83.1
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.4e-28 129.8 66 87.9
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 3.7e-27 126.7 74 78.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 3.1e-26 123.6 373 27.1
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.8e-24 116.7 160 45.6
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 5.0e-24 116.3 92 68.5
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 2.1e-22 110.9 116 51.7
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.3e-21 107.5 63 76.2
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 6.3e-19 99.4 95 54.7
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 3.5e-17 93.6 61 70.5
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.5e-15 88.2 51 74.5
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 9.5e-15 85.5 242 30.6
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 2.0e-12 77.8 45 77.8
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-11 75.1 41 80.5
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 5.4e-10 69.7 75 49.3
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 1.1e-07 62.0 33 87.9
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 7.3e-07 59.3 42 61.9
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 7.3e-07 59.3 42 61.9
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 8.0e-06 55.8 58 41.4


User provided reference genes

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