Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 7.5e-253 876.7 444 100.0
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 1.2e-202 709.9 446 79.4
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.3e-201 705.7 464 78.0
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 3.0e-201 705.3 435 78.6
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 2.1e-199 699.1 439 79.7
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 4.8e-199 698.0 452 77.7
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 2.4e-198 695.7 438 78.8
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 5.3e-198 694.5 446 78.0
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 4.5e-197 691.4 453 76.2
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 7.6e-197 690.6 453 76.2
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 1.0e-196 690.3 437 77.8
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 1.3e-196 689.9 439 78.4
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 2.9e-196 688.7 439 78.1
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 1.2e-194 683.3 439 78.6
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 3.5e-194 681.8 431 78.0
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 4.6e-194 681.4 439 75.4
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 7.9e-194 680.6 441 76.9
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 7.9e-194 680.6 431 77.7
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.3e-193 679.9 452 74.8
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 2.3e-193 679.1 438 75.1
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 5.1e-193 677.9 434 77.0
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 4.3e-192 674.9 435 75.6
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 5.7e-192 674.5 434 77.9
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 9.7e-192 673.7 413 80.9
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 1.6e-191 672.9 439 76.5
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.8e-190 669.5 441 75.5
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 3.1e-190 668.7 438 75.1
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 4.5e-189 664.8 437 74.8
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 1.7e-188 662.9 433 77.4
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.7e-186 655.6 421 76.2
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 4.6e-186 654.8 436 74.5
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 3.9e-185 651.7 407 79.6
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 1.1e-184 650.2 431 74.2
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 2.2e-183 646.0 433 74.8
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 6.3e-183 644.4 439 71.5
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 4.1e-182 641.7 423 72.8
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 6.9e-182 641.0 435 74.5
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 4.5e-181 638.3 439 70.6
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 4.5e-181 638.3 388 81.2
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 5.9e-181 637.9 432 74.1
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.9e-180 635.6 433 73.2
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 4.7e-178 628.2 443 70.0
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 3.9e-177 625.2 386 77.7
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 8.8e-177 624.0 446 69.1
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 7.4e-176 620.9 400 77.2
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 2.2e-175 619.4 420 72.1
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 4.1e-174 615.1 428 70.8
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 4.1e-174 615.1 428 70.8
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 3.5e-173 612.1 431 72.9
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 4.5e-173 611.7 445 68.5
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 6.5e-172 607.8 457 68.1
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.4e-171 606.7 432 69.7
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 8.0e-170 600.9 440 67.5
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 2.3e-169 599.4 360 83.3
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 5.2e-169 598.2 452 69.0
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 7.0e-166 587.8 411 69.3
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 9.1e-166 587.4 396 74.2
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 2.9e-164 582.4 388 70.4
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 3.8e-164 582.0 545 56.7
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.9e-163 579.7 646 50.6
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.2e-157 560.5 438 66.7
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.7e-157 559.3 455 65.5
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 3.5e-157 558.9 433 66.3
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.1e-155 553.9 433 64.7
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 3.6e-154 548.9 352 75.9
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 3.6e-154 548.9 439 64.2
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.0e-153 547.4 347 77.2
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 3.7e-151 538.9 442 64.9
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 7.0e-150 534.6 366 69.4
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 8.6e-148 527.7 343 76.7
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.5e-147 526.2 437 63.2
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 4.2e-147 525.4 442 62.4
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 2.8e-146 522.7 436 63.1
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 4.7e-146 521.9 556 51.8
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 4.9e-143 511.9 421 59.1
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 3.1e-142 509.2 355 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 5.0e-140 501.9 406 59.1
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 3.4e-136 489.2 319 74.9
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 4.4e-136 488.8 427 57.4
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 2.3e-132 476.5 422 55.9
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.5e-131 473.8 475 56.0
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 3.1e-129 466.1 450 57.6
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 1.6e-125 453.8 315 73.0
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 4.3e-123 445.7 314 71.0
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.2e-120 437.6 289 75.4
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 4.4e-120 435.6 288 75.0
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 8.7e-108 394.8 294 68.4
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.6e-101 374.0 447 45.9
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 9.6e-99 364.8 299 64.5
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 6.2e-98 362.1 264 68.6
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 7.6e-88 328.6 427 42.4
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 5.5e-86 322.4 317 54.6
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.5e-83 314.3 227 69.2
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 9.3e-78 295.0 225 69.8
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 6.1e-77 292.4 456 38.8
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 9.4e-70 268.5 170 78.8
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 6.9e-65 252.3 199 61.3
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.7e-53 213.8 153 71.2
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.1e-51 208.4 174 64.4
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.1e-46 191.8 139 64.7
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 7.2e-46 189.1 416 31.0
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 4.0e-44 183.3 115 76.5
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.1e-41 173.3 101 82.2
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 7.7e-40 169.1 103 78.6
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.4e-36 158.3 107 75.7
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.4e-36 158.3 107 75.7
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 2.3e-36 157.5 111 70.3
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 6.6e-31 139.4 106 69.8
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 2.4e-17 94.4 62 75.8
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 1.8e-12 78.2 45 84.4
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 8.9e-12 75.9 56 57.1
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.6e-11 74.3 46 84.8
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 4.4e-11 73.6 205 23.4
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 2.7e-08 64.3 43 69.8
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 6.0e-08 63.2 77 48.1


User provided reference genes

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