Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 7.9e-218 760.4 446 100.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.6e-178 629.8 446 80.5
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 5.5e-163 578.2 448 77.2
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 5.6e-155 551.6 452 77.2
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 5.2e-153 545.0 447 70.5
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 4.4e-152 542.0 446 73.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 9.2e-150 534.3 448 69.4
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.7e-148 530.0 451 74.5
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 5.6e-147 525.0 450 72.9
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 8.0e-146 521.2 447 70.5
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.9e-143 512.7 450 68.4
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 6.0e-141 505.0 451 67.6
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 7.8e-141 504.6 454 67.0
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.7e-138 495.4 428 72.7
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 6.8e-137 491.5 448 70.8
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 8.9e-137 491.1 451 71.0
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.5e-136 490.3 447 67.6
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.2e-135 486.5 449 70.4
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 7.1e-134 481.5 459 64.7
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 7.1e-134 481.5 459 64.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 7.1e-134 481.5 449 69.7
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.2e-133 480.7 450 68.7
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 2.7e-133 479.6 453 66.7
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 7.8e-133 478.0 458 63.1
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 7.8e-133 478.0 451 68.1
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.3e-132 476.5 466 65.2
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.0e-132 476.1 448 69.4
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.0e-132 476.1 428 72.4
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 8.6e-132 474.6 466 62.4
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.1e-131 474.2 463 68.5
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.5e-131 473.0 449 68.2
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.3e-131 472.6 453 68.9
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.4e-129 466.5 453 67.5
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 5.2e-129 465.3 461 67.7
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.7e-124 450.3 450 62.0
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 5.1e-124 448.7 446 67.5
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 2.5e-123 446.4 451 65.6
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 5.6e-123 445.3 453 61.4
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.6e-122 443.7 426 57.7
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.6e-122 443.7 455 65.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.1e-122 443.4 450 66.2
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 6.2e-122 441.8 450 66.0
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.1e-121 439.5 452 67.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 6.9e-121 438.3 463 60.0
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 9.0e-121 438.0 446 59.6
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.6e-120 436.4 445 65.2
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.2e-119 433.3 455 63.5
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.9e-118 430.3 450 63.3
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.1e-118 428.3 453 64.0
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.3e-116 424.1 445 64.5
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 3.0e-116 422.9 451 59.6
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 3.0e-116 422.9 447 63.5
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 9.6e-115 417.9 413 63.9
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 3.6e-114 416.0 448 61.6
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.8e-114 415.6 447 64.4
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.8e-114 415.6 447 64.4
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.4e-113 414.1 447 63.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.8e-113 413.7 447 63.5
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.4e-113 413.3 449 52.8
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 3.2e-102 376.3 424 62.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 5.5e-102 375.6 460 57.6
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 9.3e-102 374.8 447 61.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 7.9e-101 371.7 458 60.7
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 3.7e-98 362.8 381 64.0
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.1e-97 361.3 447 61.1
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 4.0e-97 359.4 445 50.6
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.6e-90 337.4 447 51.5
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.7e-87 327.4 447 55.0
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.1e-85 320.5 424 56.1
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 8.8e-84 315.1 458 55.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 4.1e-81 306.2 446 41.9
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.5e-78 297.0 448 50.7
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.7e-77 293.5 453 43.7
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.8e-74 282.7 368 61.4
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 7.0e-73 278.9 232 61.6
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.0e-64 250.8 465 48.8
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 7.7e-64 248.8 455 52.7
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 5.5e-62 242.7 445 45.4
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.4e-49 201.4 129 71.3
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.4e-49 201.4 129 71.3
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.6e-48 198.0 471 38.0
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.5e-38 164.1 452 34.5
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 9.5e-38 162.2 228 41.2
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 9.5e-38 162.2 228 41.2
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.6e-37 161.4 467 40.9
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.6e-37 161.4 137 56.2
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 2.1e-37 161.0 125 58.4
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.8e-37 160.6 137 56.9
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.8e-37 160.6 137 56.9
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.6e-37 160.2 156 49.4
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.6e-37 160.2 465 38.3
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.8e-36 157.9 125 56.8
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.8e-36 157.9 199 45.7
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.3e-36 157.5 269 38.7
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.3e-36 157.5 462 35.5
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.3e-36 157.5 297 39.1
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 4.0e-36 156.8 265 38.5
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 5.2e-36 156.4 270 40.7
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 6.8e-36 156.0 200 43.5
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 8.9e-36 155.6 154 49.4
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 8.9e-36 155.6 139 53.2
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 8.9e-36 155.6 445 32.4
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 8.9e-36 155.6 445 32.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 1.2e-35 155.2 432 35.4
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.2e-35 155.2 204 42.6
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.2e-35 155.2 168 47.6
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.5e-35 154.8 163 50.3
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.5e-35 154.8 306 34.6
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.5e-35 154.8 372 46.8
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 2.6e-35 154.1 264 38.6
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 3.4e-35 153.7 193 44.6
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.4e-35 153.7 154 48.7
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.4e-35 153.3 264 40.5
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.4e-35 153.3 295 35.9
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 4.4e-35 153.3 145 50.3
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 7.5e-35 152.5 443 33.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 9.8e-35 152.1 189 43.4
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 9.8e-35 152.1 124 55.6
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.3e-34 151.8 124 55.6
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.3e-34 151.8 161 48.4
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.3e-34 151.8 443 30.2
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.3e-34 151.8 265 40.0
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.7e-34 151.4 454 34.6
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.9e-34 150.6 124 55.6
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.9e-34 150.6 124 56.5
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.9e-34 150.6 291 38.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.9e-34 150.6 291 38.8
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.7e-34 150.2 124 55.6
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 4.9e-34 149.8 124 54.0
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 4.9e-34 149.8 130 53.1
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 4.9e-34 149.8 449 37.6
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 8.3e-34 149.1 443 30.9
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.1e-33 148.7 448 36.4
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.1e-33 148.7 124 54.8
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.4e-33 147.5 160 47.5
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.2e-33 147.1 124 53.2
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.2e-33 147.1 124 53.2
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 3.2e-33 147.1 271 37.6
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 4.1e-33 146.7 435 27.6
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.1e-33 146.7 168 45.2
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 5.4e-33 146.4 124 52.4
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 9.2e-33 145.6 455 35.2
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.2e-32 145.2 135 50.4
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.2e-32 145.2 275 36.4
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 3.5e-32 143.7 264 36.4
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 4.6e-32 143.3 449 33.4
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 2.3e-31 141.0 266 37.2
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.3e-31 141.0 439 31.9
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 3.0e-31 140.6 124 52.4
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.6e-31 139.4 448 33.0
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 8.6e-31 139.0 264 37.9
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 8.6e-31 139.0 289 36.0
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.3e-30 137.1 286 35.7
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 5.6e-30 136.3 447 31.3
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 7.3e-30 136.0 78 83.3
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.2e-29 135.2 453 38.2
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.7e-26 124.8 256 35.2
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 2.9e-26 124.0 154 49.4
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.2e-08 65.5 57 56.1
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.5e-06 58.5 54 51.9
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 9.6e-06 55.8 54 50.0


User provided reference genes

Program Settings