Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 3.9e-231 804.7 482 100.0
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 1.8e-122 443.7 485 56.3
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 9.7e-121 438.0 501 56.9
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 1.8e-114 417.2 501 56.3
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 6.7e-114 415.2 499 57.5
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 1.3e-112 411.0 482 57.7
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 1.8e-111 407.1 482 55.6
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 9.1e-111 404.8 498 51.0
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.2e-110 404.4 498 51.0
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 5.2e-106 389.0 491 54.8
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 1.1e-105 387.9 491 55.8
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 7.4e-105 385.2 501 49.9
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 2.4e-103 380.2 511 52.3
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 2.9e-101 373.2 494 49.8
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 5.0e-101 372.5 496 48.0
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 3.2e-100 369.8 496 47.4
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 7.2e-100 368.6 487 47.0
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 2.7e-99 366.7 476 48.9
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 1.7e-96 357.5 493 50.5
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 2.8e-96 356.7 578 48.4
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.4e-95 354.4 485 51.5
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 4.1e-95 352.8 492 48.6
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 4.1e-95 352.8 492 48.8
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 7.7e-94 348.6 493 49.7
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 1.0e-93 348.2 489 44.8
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 1.5e-92 344.4 479 45.9
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 4.2e-92 342.8 391 55.5
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 9.4e-92 341.7 492 49.4
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 9.4e-92 341.7 480 46.7
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 2.1e-91 340.5 496 45.0
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 1.8e-90 337.4 494 48.6
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 1.8e-90 337.4 492 50.8
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 2.3e-90 337.0 497 45.3
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.4e-89 333.2 495 50.5
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 7.5e-89 332.0 492 50.2
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 2.9e-85 320.1 435 46.0
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 5.0e-85 319.3 380 52.6
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 2.5e-84 317.0 655 40.2
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 3.3e-84 316.6 484 47.3
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 5.5e-84 315.8 490 47.3
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 6.1e-83 312.4 472 45.1
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 3.4e-81 306.6 461 52.3
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 3.4e-81 306.6 501 42.3
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 4.9e-80 302.8 499 42.9
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 6.3e-80 302.4 419 45.6
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 5.4e-79 299.3 452 47.8
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 7.0e-79 298.9 492 42.3
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 1.2e-78 298.1 491 45.0
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 5.6e-76 289.3 512 41.0
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 1.2e-75 288.1 494 43.9
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 1.6e-75 287.7 490 44.7
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 1.4e-74 284.6 492 42.5
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 1.4e-74 284.6 492 41.5
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 4.0e-74 283.1 486 44.9
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 2.0e-73 280.8 494 41.7
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 2.6e-73 280.4 493 45.4
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 3.4e-73 280.0 418 43.8
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 4.4e-73 279.6 452 44.7
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 4.4e-73 279.6 424 51.4
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 5.8e-73 279.3 492 40.2
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 5.8e-73 279.3 489 45.0
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 1.7e-72 277.7 491 44.2
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 2.9e-72 276.9 455 40.0
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 9.2e-71 271.9 489 44.4
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 3.5e-70 270.0 485 47.4
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 4.6e-70 269.6 492 40.2
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 4.6e-70 269.6 492 40.2
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 4.6e-70 269.6 402 48.0
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 3.9e-69 266.5 492 39.6
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 8.6e-69 265.4 492 43.1
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 3.3e-68 263.5 369 52.0
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 1.2e-67 261.5 534 38.8
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 2.1e-67 260.8 492 43.1
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.8e-67 260.4 475 41.9
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 2.1e-62 244.2 490 39.0
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 3.0e-61 240.4 492 39.6
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 5.1e-61 239.6 428 44.6
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 4.0e-58 229.9 475 43.6
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 3.7e-56 223.4 484 41.1
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 1.9e-55 221.1 268 52.6
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 1.1e-52 211.8 501 36.5
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 5.6e-52 209.5 493 37.7
vmacro05229 Vaccinium macrocarpon HOM05D000240 ORTHO05D002608 2.6e-49 200.7 271 48.0
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 8.4e-48 195.7 479 38.2
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.2e-46 191.8 490 37.3
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 1.7e-37 161.4 183 55.7
Os09g0421200 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002608 3.3e-36 157.1 360 39.2
CDE05G2293 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 8.1e-35 152.5 370 37.0
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 2.4e-34 151.0 262 42.0
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 1.3e-32 145.2 474 30.6
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 6.0e-30 136.3 159 54.1
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.9e-30 136.0 179 49.7
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.9e-30 136.0 179 49.7
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 5.1e-29 133.3 177 50.3
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.1e-28 132.1 176 48.9
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 1.2e-25 122.1 176 48.3
Sabra13G0113100 Salix brachista HOM05D000009 ORTHO05D000008 8.4e-24 115.9 358 35.2
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 3.3e-20 104.0 172 39.5
Psat7g032320 Pisum sativum HOM05D000240 ORTHO05D002608 3.7e-19 100.5 222 32.9
QL07p009794 Quercus lobata HOM05D000240 ORTHO05D002608 2.2e-16 91.3 111 50.5
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 1.4e-15 88.6 250 33.6
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 5.5e-15 86.7 86 59.3
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 5.5e-15 86.7 86 59.3
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 1.3e-13 82.0 134 46.3
MBI14_g46138_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D016689 2.5e-12 77.8 111 43.2
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 7.4e-12 76.3 64 70.3
Psat6g089440 Pisum sativum HOM05D000240 ORTHO05D002608 1.3e-11 75.5 138 31.2
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 2.8e-11 74.3 64 68.8
CSS0017071 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 3.1e-10 70.9 66 57.6
CSS0038394 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 3.1e-10 70.9 66 57.6
Haze_02871 Corylus avellana HOM05D000108 ORTHO05D000014 5.0e-08 63.5 72 55.6
HPP92_026952 Vanilla planifolia HOM05D003358 ORTHO05D003864 2.7e-06 57.8 142 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3512 Anthoceros agrestis HOM05D000240 ORTHO05D002608 7.9e-06 56.2 165 34.5


User provided reference genes

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