Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 1.1e-255 886.3 504 100.0
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 1.7e-160 570.1 516 64.5
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 8.2e-139 498.0 524 63.7
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 5.3e-138 495.4 520 63.3
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 4.4e-132 475.7 545 60.0
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 6.3e-131 471.9 520 63.7
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.6e-129 467.2 526 58.7
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 3.5e-129 466.1 530 56.6
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 1.6e-126 457.2 532 57.0
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 3.6e-126 456.1 529 57.3
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 5.7e-124 448.7 534 59.7
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 9.8e-124 448.0 536 60.4
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 1.8e-122 443.7 480 65.0
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.7e-120 437.2 513 54.8
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 5.0e-120 435.6 519 58.4
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 2.1e-118 430.3 515 55.7
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 4.7e-118 429.1 508 57.7
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 8.0e-118 428.3 508 59.3
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.0e-117 427.9 518 59.3
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 3.0e-117 426.4 539 55.8
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 5.2e-117 425.6 530 56.4
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 1.1e-114 417.9 539 58.8
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 2.4e-114 416.8 470 56.8
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 3.2e-114 416.4 550 54.2
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.7e-113 413.3 509 56.2
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.9e-113 412.1 527 55.4
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 7.8e-113 411.8 506 54.2
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 7.8e-113 411.8 516 57.4
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 1.7e-112 410.6 539 55.5
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 3.0e-112 409.8 506 54.0
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.0e-112 409.8 506 54.0
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.9e-112 409.5 527 55.4
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 1.6e-110 404.1 477 58.5
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.2e-108 397.9 505 57.0
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.6e-108 396.7 505 57.2
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 8.3e-107 391.7 537 54.7
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 1.2e-105 387.9 538 50.6
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 3.5e-105 386.3 534 51.1
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 3.0e-104 383.3 533 50.1
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 3.3e-103 379.8 544 48.7
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.3e-103 379.8 507 51.1
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 9.5e-103 378.3 506 51.6
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.2e-102 377.9 535 49.2
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 2.8e-102 376.7 528 53.8
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 8.1e-102 375.2 525 54.7
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 2.3e-101 373.6 528 48.5
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 5.2e-101 372.5 513 53.8
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 5.2e-101 372.5 555 47.4
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 8.9e-101 371.7 553 47.0
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 9.9e-100 368.2 543 47.9
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.4e-98 364.4 535 46.5
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.4e-98 363.6 535 48.4
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 7.1e-98 362.1 507 54.0
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 9.2e-98 361.7 451 53.9
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 6.0e-97 359.0 461 53.1
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.0e-96 358.2 510 53.3
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.0e-96 358.2 461 57.7
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.7e-96 357.5 483 51.6
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 1.5e-95 354.4 486 50.4
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 3.3e-95 353.2 464 56.0
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 3.3e-95 353.2 522 47.5
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 1.2e-94 351.3 484 57.4
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.6e-94 350.9 519 52.0
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.6e-94 350.9 548 46.9
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 2.1e-94 350.5 520 47.7
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 2.8e-94 350.1 517 48.0
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 2.8e-94 350.1 488 50.8
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 8.1e-94 348.6 517 54.0
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 1.8e-93 347.4 569 45.3
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 2.4e-93 347.1 473 50.7
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 3.1e-93 346.7 475 49.7
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 8.9e-93 345.1 534 47.2
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 1.2e-92 344.7 535 48.2
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 2.0e-92 344.0 546 46.7
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 4.4e-92 342.8 537 47.1
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 5.8e-92 342.4 519 48.2
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 5.8e-92 342.4 485 49.7
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 9.9e-92 341.7 476 54.2
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 2.9e-91 340.1 523 48.2
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 4.9e-91 339.3 563 46.0
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 2.4e-90 337.0 530 50.2
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 1.0e-88 331.6 521 48.2
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 2.3e-88 330.5 519 51.3
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 3.0e-88 330.1 514 50.4
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 3.9e-88 329.7 485 52.4
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 1.1e-87 328.2 520 47.1
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 2.5e-87 327.0 453 54.1
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 6.2e-86 322.4 538 44.8
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 1.1e-85 321.6 530 49.1
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 3.1e-85 320.1 455 53.4
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 9.3e-82 308.5 489 50.7
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 3.9e-80 303.1 439 50.6
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 1.5e-76 291.2 521 44.5
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 2.7e-73 280.4 566 43.6
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 1.3e-72 278.1 517 42.4
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 1.8e-72 277.7 528 44.3
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.5e-71 274.6 442 44.3
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 4.3e-71 273.1 284 60.9
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 3.8e-67 260.0 545 40.6
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.7e-65 253.8 347 55.6
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.6e-65 253.1 298 53.7
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.5e-63 247.3 289 54.0
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 7.4e-63 245.7 286 62.9
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 1.8e-61 241.1 540 37.8
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.1e-58 231.9 291 50.2
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 3.5e-57 226.9 512 40.4
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 5.1e-56 223.0 241 64.7
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 1.4e-53 214.9 579 35.2
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 1.3e-51 208.4 521 40.5
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 3.2e-50 203.8 311 47.9
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 1.7e-46 191.4 381 38.6
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 1.1e-45 188.7 513 40.4
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 6.5e-43 179.5 151 64.2
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.3e-38 165.2 181 54.7
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 2.6e-36 157.5 138 64.5
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 2.7e-33 147.5 154 52.6
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.4e-32 145.2 170 54.7
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.6e-31 141.0 156 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 8.0e-25 119.4 292 43.2
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 8.8e-24 115.9 72 77.8
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 3.1e-21 107.5 72 73.6
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 5.9e-20 103.2 430 29.5
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 3.8e-19 100.5 108 57.4
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 1.1e-18 99.0 161 39.1
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 2.5e-18 97.8 96 53.1
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 3.4e-15 87.4 454 33.0
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 6.3e-14 83.2 66 60.6
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 7.7e-12 76.3 559 25.2
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-10 70.9 93 36.6


User provided reference genes

Program Settings