Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.6e-265 918.3 508 100.0
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 9.3e-223 776.9 494 87.0
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 3.8e-168 595.5 533 68.1
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 5.5e-151 538.5 551 61.9
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 4.4e-148 528.9 542 60.1
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 4.4e-148 528.9 547 62.9
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.3e-147 527.3 545 58.9
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.5e-145 519.2 543 57.5
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 7.8e-145 518.1 543 57.3
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.0e-144 517.7 560 58.2
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.5e-143 513.1 543 57.1
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 4.7e-142 508.8 549 57.0
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.8e-141 506.9 544 57.5
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 4.0e-141 505.8 549 56.6
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.4e-140 502.3 561 59.2
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.7e-139 500.4 554 54.0
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.7e-139 500.4 547 60.0
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.2e-139 500.0 549 54.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 8.3e-139 498.0 551 54.4
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.1e-138 495.7 562 54.6
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 5.4e-138 495.4 547 56.1
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 5.4e-138 495.4 549 57.9
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.0e-137 493.4 535 62.2
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 4.6e-137 492.3 555 57.1
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 6.0e-137 491.9 541 56.0
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 6.8e-133 478.4 530 61.3
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 8.9e-133 478.0 536 58.0
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 5.8e-132 475.3 552 51.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 9.8e-132 474.6 544 57.5
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.7e-131 473.8 545 55.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.7e-131 473.8 546 57.9
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.2e-131 473.4 522 56.1
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 3.7e-131 472.6 549 54.3
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.7e-131 472.6 544 52.9
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 4.9e-131 472.2 551 55.9
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 7.0e-130 468.4 514 54.1
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.5e-129 466.1 550 52.9
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.5e-129 466.1 529 57.8
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 7.8e-129 464.9 558 54.3
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 3.9e-128 462.6 538 57.6
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 5.1e-128 462.2 533 55.3
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 8.6e-128 461.5 542 56.5
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 9.5e-127 458.0 554 51.8
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.1e-126 456.8 550 56.4
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 8.1e-126 454.9 594 51.5
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.1e-125 454.5 547 55.2
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.4e-125 454.1 537 51.8
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.5e-124 450.7 526 58.2
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.6e-124 449.9 539 55.7
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.6e-124 449.9 537 55.5
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 4.4e-124 449.1 566 49.1
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.3e-123 447.6 497 54.7
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.9e-123 446.4 550 54.5
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.2e-122 443.0 518 57.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 9.2e-122 441.4 534 55.8
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-121 440.7 518 57.5
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.1e-121 440.3 556 53.1
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 3.0e-120 436.4 617 50.1
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 8.6e-120 434.9 546 52.6
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.5e-119 433.3 546 53.8
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 9.6e-119 431.4 538 51.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 3.6e-118 429.5 508 56.5
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 3.6e-118 429.5 534 55.1
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.4e-117 427.6 516 55.6
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 3.1e-117 426.4 540 53.3
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 5.8e-116 422.2 522 50.4
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 9.9e-116 421.4 539 53.1
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 4.9e-115 419.1 521 52.2
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-114 417.9 526 54.9
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.9e-114 417.2 525 52.4
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 3.2e-114 416.4 544 49.1
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 5.4e-114 415.6 506 55.5
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 9.3e-114 414.8 538 51.7
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.5e-113 412.9 535 53.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 5.1e-112 409.1 464 54.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.5e-111 407.5 526 54.4
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.5e-111 406.8 534 51.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.5e-111 406.8 464 54.7
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.6e-111 405.6 526 54.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.6e-110 402.9 464 54.3
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 8.1e-110 401.7 487 51.3
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-109 401.0 528 54.0
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 3.1e-109 399.8 534 49.6
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.7e-107 394.0 543 47.5
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 6.4e-107 392.1 530 53.4
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.4e-106 391.0 551 47.2
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.6e-105 387.5 528 48.3
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 4.6e-105 386.0 539 49.4
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 6.0e-105 385.6 543 51.0
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.3e-104 384.4 536 50.0
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 5.1e-104 382.5 513 48.3
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.1e-101 374.8 529 52.4
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 4.0e-101 372.9 517 45.5
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.2e-100 371.3 529 52.2
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 3.4e-100 369.8 550 47.5
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.4e-100 369.8 551 47.4
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 7.6e-100 368.6 533 50.7
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 7.6e-100 368.6 531 51.6
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.3e-99 367.9 529 45.4
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 4.9e-99 365.9 520 45.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.2e-98 363.2 537 51.2
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.2e-98 363.2 537 51.2
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 7.1e-98 362.1 552 46.6
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.2e-97 361.3 540 48.1
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.6e-97 360.9 526 47.5
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.8e-96 357.5 527 49.7
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 7.4e-95 352.1 728 40.9
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.8e-94 349.4 429 50.6
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.7e-89 333.6 556 42.6
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 3.9e-88 329.7 559 40.3
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 3.5e-81 306.6 302 58.9
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.1e-79 301.6 299 59.2
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.5e-79 301.2 348 51.7
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.0e-72 278.5 316 54.4
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.1e-69 268.5 528 43.4
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.4e-69 268.1 525 44.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.4e-69 268.1 525 44.0
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.4e-68 263.5 528 42.4
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 5.5e-66 256.1 392 48.2
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.1e-65 254.2 580 36.2
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.0e-61 239.2 388 49.2
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.9e-52 209.5 585 34.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 8.5e-51 205.7 250 61.2
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 8.8e-48 195.7 189 56.6
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-43 181.8 281 44.5
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.9e-43 180.6 290 43.1
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.0e-40 172.2 162 59.9
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.0e-40 170.6 605 29.1
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.5e-39 168.3 240 53.3
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.4e-37 159.8 200 57.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.9e-36 156.4 509 29.7
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 8.6e-35 152.5 425 33.9
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 7.0e-29 132.9 722 26.3
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.7e-28 131.0 452 31.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 7.8e-28 129.4 96 68.8
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.2e-22 111.3 140 53.6
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 4.6e-20 103.6 430 28.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-19 102.1 94 54.3
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.3e-19 101.3 208 37.0
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 9.5e-18 95.9 92 56.5
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-16 92.4 141 41.1
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.3e-14 85.5 178 38.2
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.2e-12 79.0 467 26.8
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.1e-12 78.2 110 49.1
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 6.0e-12 76.6 342 28.1
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 5.1e-11 73.6 174 31.0
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.2e-09 66.6 246 29.7
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.3e-06 58.9 215 31.6
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.7e-06 57.4 211 27.0
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 8.4e-06 56.2 49 61.2


User provided reference genes

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