Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 3.5e-286 987.6 513 100.0
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.7e-184 649.8 447 77.9
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.4e-181 640.2 443 74.9
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 4.9e-179 631.7 442 74.2
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 9.2e-178 627.5 422 75.6
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 9.2e-178 627.5 435 74.0
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 9.2e-178 627.5 430 75.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.6e-177 626.7 444 72.7
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.4e-173 613.6 444 73.6
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.3e-173 612.8 455 71.9
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 7.5e-172 607.8 435 73.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.1e-170 604.0 430 73.7
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.4e-170 603.6 452 72.6
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 3.2e-170 602.4 425 74.8
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.0e-170 601.3 451 71.2
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.0e-169 599.7 426 74.4
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.3e-168 596.3 434 72.4
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.3e-168 596.3 454 70.3
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.5e-167 593.6 465 69.9
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.3e-167 592.4 439 71.5
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 4.3e-167 592.0 466 69.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.6e-166 590.1 428 73.1
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 6.2e-166 588.2 481 67.6
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 8.1e-166 587.8 439 70.8
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.0e-164 583.2 470 67.9
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 4.4e-164 582.0 473 66.8
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 8.3e-163 577.8 444 70.9
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-162 577.4 410 73.2
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-162 577.4 410 73.2
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 5.4e-162 575.1 439 72.0
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.1e-162 574.7 430 71.9
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.7e-161 572.8 412 73.3
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 4.6e-161 572.0 412 73.3
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.6e-161 572.0 461 67.9
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-160 570.5 435 71.3
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.7e-160 570.1 448 69.2
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.7e-160 570.1 436 70.0
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 2.3e-160 569.7 441 68.9
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.1e-160 568.5 450 69.8
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 5.1e-160 568.5 447 68.5
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-159 567.4 444 68.7
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 2.5e-159 566.2 439 69.2
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 3.3e-159 565.8 444 68.7
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 5.6e-159 565.1 424 71.2
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 7.3e-159 564.7 445 67.9
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-158 563.5 433 69.5
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.1e-158 563.1 455 65.9
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 6.2e-158 561.6 416 72.6
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 8.1e-158 561.2 411 71.5
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 8.1e-158 561.2 552 57.6
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 2.3e-157 559.7 447 66.9
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 3.1e-157 559.3 436 67.4
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 5.2e-157 558.5 436 68.8
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 5.2e-157 558.5 436 68.8
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 8.9e-157 557.8 541 59.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 8.9e-157 557.8 431 67.7
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 8.9e-157 557.8 422 71.3
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 9.9e-156 554.3 422 71.1
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.7e-155 553.5 431 66.8
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 4.9e-155 552.0 416 69.0
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.4e-154 550.4 447 65.8
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 3.2e-154 549.3 469 65.5
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 3.2e-154 549.3 446 66.6
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 7.1e-154 548.1 433 66.5
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 9.2e-154 547.7 471 63.3
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.7e-152 543.5 435 66.9
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.7e-152 543.5 435 66.9
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 8.6e-152 541.2 481 62.6
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.9e-151 540.0 436 68.1
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 6.2e-150 535.0 419 69.2
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.1e-149 532.7 428 67.3
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 3.1e-149 532.7 472 63.6
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 5.8e-148 528.5 454 63.9
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.9e-148 527.7 434 65.4
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.2e-147 526.6 439 64.7
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 2.4e-146 523.1 440 64.1
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.2e-145 520.8 434 64.1
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 2.1e-145 520.0 453 61.6
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.1e-145 520.0 418 65.8
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.0e-144 517.7 442 62.9
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 3.9e-144 515.8 437 64.1
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 8.7e-144 514.6 455 62.0
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 5.6e-143 511.9 449 61.9
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 5.6e-143 511.9 449 61.9
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 5.6e-143 511.9 434 65.0
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.6e-143 511.9 410 65.6
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.3e-142 510.8 448 62.7
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.1e-142 510.0 447 61.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 3.6e-142 509.2 448 62.5
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 2.2e-139 500.0 423 65.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.9e-139 499.6 410 64.1
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 8.4e-139 498.0 469 61.4
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.1e-138 497.7 393 66.9
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.9e-138 496.9 428 64.0
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.2e-137 494.2 443 62.1
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 2.3e-136 490.0 448 60.7
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 2.1e-134 483.4 469 58.6
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.2e-131 473.4 363 67.2
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 6.4e-131 471.9 493 54.8
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 5.5e-130 468.8 387 68.5
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.5e-130 468.8 421 59.9
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 3.5e-129 466.1 404 61.1
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.8e-128 463.8 400 64.2
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.3e-128 463.4 402 60.9
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.5e-127 459.9 402 60.7
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 7.4e-127 458.4 410 60.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.5e-124 450.7 406 60.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.6e-124 449.9 380 65.5
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 4.9e-123 445.7 464 54.3
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.4e-123 444.9 435 59.3
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.9e-122 443.7 462 55.6
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 6.0e-121 438.7 320 74.7
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.5e-119 433.3 379 63.3
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.3e-117 425.6 414 57.0
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.0e-117 424.9 415 59.5
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 5.9e-116 422.2 444 54.1
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.2e-115 420.2 418 56.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.9e-114 417.2 412 57.3
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.8e-112 410.6 366 60.4
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.3e-109 399.1 375 58.4
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.3e-107 394.4 363 59.2
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.2e-107 393.7 375 57.3
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 3.8e-107 392.9 386 58.5
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 2.0e-103 380.6 382 57.6
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 3.4e-100 369.8 376 55.9
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.6e-97 360.9 579 41.5
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.5e-91 338.6 404 50.2
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 4.2e-90 336.3 350 54.9
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 4.7e-89 332.8 335 57.0
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 4.8e-86 322.8 292 63.0
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 9.1e-85 318.5 408 47.8
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 6.1e-81 305.8 327 52.3
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 3.6e-73 280.0 304 54.6
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 4.7e-73 279.6 283 54.8
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.0e-71 274.2 292 53.8
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 7.5e-63 245.7 295 49.5
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 4.6e-60 236.5 121 95.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 2.2e-54 217.6 264 51.5
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 2.9e-54 217.2 218 57.8
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.3e-51 207.6 192 60.4
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 4.7e-49 199.9 238 48.7
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 4.9e-46 189.9 322 36.0
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 4.7e-41 173.3 114 78.9
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-39 167.5 152 63.8
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-36 158.7 151 63.6
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 6.9e-32 142.9 106 67.0
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 3.4e-31 140.6 126 66.7
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 9.3e-29 132.5 156 53.2
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 6.0e-28 129.8 170 50.6
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 1.4e-24 118.6 163 49.7
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 3.1e-24 117.5 102 66.7
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 7.6e-23 112.8 69 73.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 1.7e-22 111.7 74 70.3
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.7e-22 111.7 82 75.6
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 6.4e-22 109.8 209 42.1
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 7.1e-21 106.3 58 89.7
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.8e-19 101.7 98 50.0
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.8e-17 94.4 57 70.2
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 2.6e-15 87.8 51 80.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.1e-13 82.4 65 66.2
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-13 82.4 51 78.4
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 1.4e-13 82.0 69 53.6
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 5.5e-13 80.1 64 67.2
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 5.5e-13 80.1 51 76.5
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.1e-12 78.2 55 70.9
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.1e-12 78.2 69 63.8
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 8.7e-11 72.8 51 70.6
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-08 65.9 41 68.3
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 1.1e-08 65.9 75 54.7
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 5.3e-08 63.5 36 86.1
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 6.9e-08 63.2 40 77.5
AagrBONN_evm.TU.Sc2ySwM_368.3378 Anthoceros agrestis HOM05D003179 ORTHO05D003563 4.5e-07 60.5 314 25.2
EL10Ac9g22565 Beta vulgaris HOM05D003179 ORTHO05D003563 2.2e-06 58.2 328 22.0
EL10Ac8g20621 Beta vulgaris HOM05D003179 ORTHO05D003563 3.8e-06 57.4 309 23.6
AUR62022769 Chenopodium quinoa HOM05D003179 ORTHO05D003563 4.9e-06 57.0 309 22.7
Prupe.6G106900 Prunus persica HOM05D003179 ORTHO05D003563 4.9e-06 57.0 328 22.3
Rhsim01G0212600 Rhododendron simsii HOM05D003179 ORTHO05D003563 8.4e-06 56.2 309 23.9


User provided reference genes

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