Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 0.0e+00 1084.3 573 100.0
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 1.1e-99 368.2 575 43.3
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 6.8e-97 359.0 583 43.7
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 1.2e-93 348.2 563 43.5
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 2.7e-93 347.1 622 40.8
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 4.0e-89 333.2 546 42.7
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 6.8e-89 332.4 585 40.2
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 7.5e-88 328.9 563 42.5
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 1.3e-87 328.2 562 41.6
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 8.3e-87 325.5 554 44.6
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 2.8e-82 310.5 585 40.7
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 1.8e-81 307.8 576 39.8
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 1.2e-80 305.1 558 41.0
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 3.7e-79 300.1 614 37.3
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 6.4e-79 299.3 604 38.9
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 4.1e-78 296.6 590 40.5
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 1.5e-75 288.1 615 36.1
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 1.1e-73 282.0 513 41.1
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 4.4e-72 276.6 600 37.8
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 1.3e-71 275.0 585 37.6
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.3e-71 275.0 585 37.6
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.1e-70 271.9 585 37.6
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.6e-69 266.5 589 37.2
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 1.1e-67 261.9 590 37.3
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 4.3e-67 260.0 654 35.2
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 3.1e-65 253.8 604 36.6
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 2.0e-64 251.1 582 35.7
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 9.9e-64 248.8 622 36.8
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 8.4e-63 245.7 648 32.6
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 1.1e-62 245.4 611 34.5
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 1.4e-62 245.0 566 36.2
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 7.1e-62 242.7 656 35.4
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.7e-60 238.0 549 34.8
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 3.0e-60 237.3 563 36.1
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 9.6e-59 232.3 648 32.6
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 9.6e-59 232.3 693 31.9
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 3.6e-58 230.3 565 37.2
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 6.9e-57 226.1 544 34.6
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 2.0e-56 224.6 673 32.5
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 2.6e-56 224.2 565 33.1
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 1.3e-55 221.9 500 34.6
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.7e-55 221.5 569 34.1
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 2.2e-55 221.1 532 35.0
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 2.9e-55 220.7 424 38.2
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 3.8e-55 220.3 625 33.4
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 6.4e-55 219.5 686 31.3
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 6.4e-55 219.5 578 33.6
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 1.1e-54 218.8 544 34.9
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 1.1e-54 218.8 586 32.9
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.1e-54 218.8 688 30.5
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 2.4e-54 217.6 581 34.8
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 5.4e-54 216.5 531 34.1
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 2.1e-53 214.5 524 34.5
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 2.1e-53 214.5 524 34.5
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 2.1e-53 214.5 524 34.5
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 4.6e-53 213.4 607 31.1
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 4.6e-53 213.4 587 32.2
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.8e-52 211.5 680 30.6
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 5.1e-52 209.9 668 31.6
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 2.5e-51 207.6 639 31.9
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 9.6e-51 205.7 531 32.8
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 1.6e-50 204.9 610 31.1
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 6.2e-50 203.0 600 33.3
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 8.1e-50 202.6 504 34.9
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 1.1e-49 202.2 645 31.2
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 2.0e-48 198.0 616 30.4
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 5.8e-48 196.4 558 31.5
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 5.8e-48 196.4 635 30.4
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 1.3e-47 195.3 583 31.0
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 3.8e-47 193.7 617 33.2
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 4.9e-47 193.4 563 32.3
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 9.3e-46 189.1 524 30.2
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 1.9e-43 181.4 615 32.0
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 4.3e-43 180.3 254 44.9
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.1e-41 175.6 665 28.6
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.1e-41 175.6 652 28.5
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 1.8e-41 174.9 552 32.8
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 2.0e-40 171.4 550 32.9
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 3.4e-40 170.6 578 28.7
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 2.7e-37 161.0 542 32.3
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 6.0e-37 159.8 558 29.6
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 3.9e-36 157.1 487 31.4
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 7.7e-32 142.9 605 30.1
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 1.0e-31 142.5 574 28.4
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 2.9e-31 141.0 590 27.3
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 3.8e-31 140.6 251 35.5
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 5.0e-31 140.2 124 55.6
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 1.0e-28 132.5 279 35.5
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 2.8e-26 124.4 329 35.9
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 4.8e-26 123.6 562 28.3
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 2.0e-24 118.2 125 48.8
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 3.4e-24 117.5 651 25.8
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 4.5e-24 117.1 108 55.6
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 1.7e-23 115.2 721 25.5
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 2.2e-23 114.8 689 24.4
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 2.2e-23 114.8 108 54.6
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 3.8e-23 114.0 188 34.0
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 3.2e-22 110.9 583 27.1
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 9.7e-19 99.4 373 28.2
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 2.8e-18 97.8 364 31.9
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 4.8e-18 97.1 347 30.8
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 5.2e-12 77.0 143 26.6
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 6.7e-12 76.6 123 30.1
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 1.1e-11 75.9 174 27.6
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 2.0e-11 75.1 123 29.3
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 2.0e-11 75.1 123 30.1
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 1.7e-10 72.0 235 26.4
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 1.7e-10 72.0 124 28.2
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 2.8e-10 71.2 130 26.9
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 3.7e-10 70.9 135 25.9
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 3.7e-10 70.9 123 27.6
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 4.8e-10 70.5 143 25.2
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 6.3e-10 70.1 167 25.7
BcaC06g32966 Brassica carinata HOM05D007342 ORTHO05D009252 1.1e-09 69.3 231 32.0
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.1e-09 69.3 167 25.1
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 1.1e-09 69.3 123 26.8
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.8e-09 68.6 167 25.1
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 1.8e-09 68.6 128 28.9
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 2.4e-09 68.2 124 27.4
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 2.4e-09 68.2 124 27.4
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 2.4e-09 68.2 378 27.5
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 3.1e-09 67.8 124 26.6
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 3.1e-09 67.8 124 26.6
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 3.1e-09 67.8 124 26.6
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 3.1e-09 67.8 123 27.6
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 4.1e-09 67.4 124 26.6
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 5.3e-09 67.0 408 26.7
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 5.3e-09 67.0 116 25.9
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 7.0e-09 66.6 127 26.8
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 9.1e-09 66.2 124 26.6
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 9.1e-09 66.2 124 26.6
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 1.2e-08 65.9 128 26.6
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.6e-08 65.5 115 27.8
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 2.0e-08 65.1 125 26.4
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 5.9e-08 63.5 316 28.8
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 7.7e-08 63.2 144 25.7
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 1.7e-07 62.0 143 23.8
AL5G43810 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 2.9e-07 61.2 132 24.2
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.9e-07 61.2 257 23.0
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.9e-07 61.2 257 23.0
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 5.0e-07 60.5 130 23.8
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 6.5e-07 60.1 257 23.0
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 6.5e-07 60.1 120 25.8
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 1.5e-06 58.9 143 24.5
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 1.5e-06 58.9 120 25.8
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 2.5e-06 58.2 295 23.1
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 7.2e-06 56.6 322 19.9


User provided reference genes

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