Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 0.0e+00 1202.6 618 100.0
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 2.1e-311 1071.6 618 88.8
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 3.2e-310 1067.8 618 88.2
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 3.9e-308 1060.8 617 88.0
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.3e-307 1057.7 618 86.9
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.3e-307 1057.7 618 87.2
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 5.6e-307 1057.0 618 86.9
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.1e-305 1052.7 619 87.7
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.1e-305 1051.2 618 86.4
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 5.8e-304 1047.0 618 86.4
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.3e-303 1045.8 618 86.1
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.2e-303 1045.0 618 85.8
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 4.9e-303 1043.9 618 86.2
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 7.1e-302 1040.0 615 86.2
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.1e-301 1038.5 618 85.8
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.5e-301 1037.7 618 86.6
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 7.9e-301 1036.6 618 85.6
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.8e-300 1035.4 618 85.9
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 3.0e-300 1034.6 618 85.4
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.1e-299 1032.7 618 85.3
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.4e-297 1025.8 618 85.1
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 2.4e-297 1025.0 615 84.7
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 7.6e-296 1020.0 616 84.7
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-295 1019.2 628 83.3
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 8.5e-295 1016.5 618 84.6
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.4e-294 1015.8 625 83.7
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 7.2e-294 1013.4 618 83.5
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 7.2e-294 1013.4 642 81.8
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.8e-292 1008.8 619 83.5
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.0e-292 1008.1 618 83.0
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.6e-290 1002.3 618 83.0
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.6e-290 1002.3 618 82.2
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.8e-289 998.8 619 82.7
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.6e-288 995.0 617 82.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.7e-288 993.4 657 79.1
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.9e-286 988.8 623 80.9
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 7.2e-286 986.9 618 81.7
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 9.4e-286 986.5 620 83.1
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 4.6e-285 984.2 618 80.6
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.4e-284 982.6 685 76.6
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 1.8e-284 982.2 618 81.2
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 6.7e-284 980.3 624 81.1
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 4.4e-283 977.6 620 81.3
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 5.7e-283 977.2 618 82.0
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 1.7e-282 975.7 617 80.1
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.7e-282 975.7 617 80.1
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.7e-282 975.7 617 80.2
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.1e-281 973.0 617 79.7
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 2.4e-281 971.8 618 79.9
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 3.4e-280 968.0 617 79.3
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.0e-279 966.5 619 80.3
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.0e-279 966.5 619 80.3
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.2e-279 965.3 619 80.0
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 2.2e-279 965.3 617 79.4
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.9e-278 962.2 753 69.5
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.2e-277 959.5 617 78.4
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.1e-277 958.7 614 79.3
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 6.1e-277 957.2 614 79.0
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.8e-276 955.7 650 76.0
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 6.7e-276 953.7 616 78.7
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.5e-275 952.6 623 79.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.0e-275 952.2 617 78.8
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.2e-274 948.7 611 78.7
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.8e-274 948.3 645 75.2
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 7.2e-270 933.7 610 77.2
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 9.4e-270 933.3 618 76.9
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.8e-268 929.1 629 75.4
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.2e-267 926.4 542 86.9
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 4.8e-266 921.0 618 76.5
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 8.2e-266 920.2 618 75.7
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.4e-265 919.5 615 76.1
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 2.4e-265 918.7 615 77.4
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.4e-265 918.7 615 75.9
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 9.1e-265 916.8 615 76.6
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 3.0e-260 901.7 575 79.7
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 3.1e-257 891.7 583 78.2
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.6e-256 889.4 616 72.7
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.5e-256 887.9 615 74.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.9e-255 885.2 618 73.8
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.9e-254 882.5 617 74.1
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.2e-254 881.7 633 72.8
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.1e-253 879.0 618 74.1
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 4.0e-252 874.8 615 72.2
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 9.8e-251 870.2 624 73.9
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 2.8e-250 868.6 600 73.7
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.0e-249 864.0 639 71.0
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.9e-247 858.6 517 83.8
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 8.6e-247 857.1 517 83.9
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.9e-246 855.9 602 72.8
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 1.2e-245 853.2 514 85.6
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.1e-245 852.4 576 77.6
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.6e-239 830.9 616 68.7
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 9.8e-235 817.0 616 69.6
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 8.1e-229 797.3 447 91.1
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.8e-213 745.7 615 59.3
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.2e-213 744.6 469 80.0
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 8.4e-210 734.2 567 69.7
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 8.4e-210 734.2 620 59.2
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-207 726.9 558 69.9
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 7.6e-195 684.5 615 57.4
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.9e-185 653.3 649 51.5
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 7.4e-182 641.3 362 89.8
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.4e-169 600.5 342 90.4
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 6.1e-168 595.1 360 83.9
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.3e-165 585.1 488 67.0
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.2e-160 570.9 617 50.6
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 8.0e-152 541.6 617 47.3
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 9.1e-148 528.1 392 71.4
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 6.6e-138 495.4 364 70.1
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 6.8e-127 458.8 511 46.4
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.4e-124 449.1 607 44.8
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 8.9e-119 431.8 282 81.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 5.1e-114 416.0 375 63.7
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 9.5e-105 385.2 458 53.1
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.6e-72 278.1 175 80.0
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.5e-70 271.6 171 81.3
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.7e-64 250.4 149 87.9
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.6e-62 244.2 188 64.4
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.6e-62 244.2 144 86.1
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.8e-56 223.4 134 82.1
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.7e-51 207.6 151 72.8
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 9.7e-49 199.1 116 86.2
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-45 188.3 122 80.3
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.8e-45 187.2 135 69.6
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.1e-44 185.7 105 90.5
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 1.2e-43 182.2 107 84.1
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.1e-39 169.1 105 78.1
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.8e-39 168.3 178 53.9
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 2.8e-32 144.4 86 83.7
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.5e-30 137.1 74 91.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 7.2e-28 129.8 100 70.0
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 4.4e-25 120.6 106 54.7
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.2e-22 112.5 86 67.4
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-22 112.1 58 89.7
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.9e-20 105.1 76 71.1
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 5.5e-20 103.6 54 90.7
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.6e-19 102.1 59 76.3
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.6e-19 102.1 59 76.3
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.4e-18 99.0 59 76.3
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.4e-18 99.0 59 76.3
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 6.8e-18 96.7 117 53.8
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 8.3e-16 89.7 50 82.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 5.0e-13 80.5 56 66.1
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.1e-12 79.3 43 83.7
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 7.3e-12 76.6 44 70.5
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 3.4e-09 67.8 80 45.0
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.7e-08 64.3 38 76.3
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 9.2e-07 59.7 73 47.9
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 1.6e-06 58.9 40 75.0


User provided reference genes

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