Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 2.5e-206 721.8 359 100.0
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 1.4e-87 327.4 345 54.8
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 2.4e-55 220.3 332 44.9
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 1.3e-53 214.5 360 39.2
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 2.1e-51 207.2 392 38.5
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 5.5e-44 182.6 359 37.9
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 2.8e-40 170.2 377 33.7
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 1.8e-39 167.5 364 36.0
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 4.0e-39 166.4 378 37.3
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 6.9e-39 165.6 377 33.7
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 6.9e-39 165.6 340 36.5
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 1.5e-38 164.5 329 35.6
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 3.4e-38 163.3 212 44.3
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 4.5e-38 162.9 376 33.5
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 5.0e-37 159.5 339 33.9
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 5.0e-37 159.5 337 36.2
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 8.4e-37 158.7 378 33.3
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 2.3e-34 150.6 332 35.8
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 1.5e-33 147.9 333 34.5
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 3.3e-33 146.7 294 38.1
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 1.6e-32 144.4 331 36.9
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 1.6e-32 144.4 319 34.8
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 2.0e-30 137.5 200 42.0
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 2.6e-30 137.1 228 36.8
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 3.2e-28 130.2 319 33.5
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 7.2e-28 129.0 225 37.3
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 9.4e-28 128.6 305 34.8
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.7e-27 127.1 296 34.5
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 4.6e-27 126.3 367 30.5
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 1.4e-26 124.8 298 34.2
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 1.4e-26 124.8 342 30.1
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 6.7e-26 122.5 318 34.0
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 3.3e-25 120.2 376 28.7
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 4.3e-25 119.8 363 29.5
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 2.2e-24 117.5 241 36.9
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 2.8e-24 117.1 328 33.5
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 3.7e-24 116.7 258 36.4
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 3.7e-24 116.7 338 33.1
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 1.4e-23 114.8 257 34.2
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 2.4e-23 114.0 328 31.1
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 4.1e-23 113.2 279 34.1
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 5.3e-23 112.8 337 32.3
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 9.1e-23 112.1 199 37.7
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 9.1e-23 112.1 162 46.9
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 1.5e-22 111.3 211 40.3
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 4.5e-22 109.8 370 30.0
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 1.3e-21 108.2 387 30.5
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 8.5e-21 105.5 351 30.8
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 8.5e-21 105.5 266 32.3
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 1.4e-20 104.8 308 31.8
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 1.9e-20 104.4 260 34.2
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 2.5e-20 104.0 328 30.2
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 3.2e-20 103.6 321 31.8
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 1.2e-19 101.7 353 30.6
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 1.2e-19 101.7 359 31.5
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 3.6e-19 100.1 316 29.4
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 6.1e-19 99.4 393 30.8
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 7.9e-19 99.0 309 29.4
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 2.3e-18 97.4 322 30.1
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 5.1e-18 96.3 165 36.4
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 8.8e-18 95.5 269 34.2
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 2.6e-17 94.0 354 31.9
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 2.6e-17 94.0 195 39.5
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 7.4e-17 92.4 111 45.9
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 9.7e-17 92.0 232 36.2
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 2.8e-16 90.5 162 38.3
Oeu064683.1 Olea europaea HOM05D007641 ORTHO05D007630 3.7e-16 90.1 171 36.8
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 6.3e-16 89.4 194 35.6
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 1.1e-15 88.6 200 34.0
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 1.4e-15 88.2 315 29.8
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 1.8e-15 87.8 257 30.0
Thhalv10017756m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 4.1e-15 86.7 203 32.5
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 4.1e-15 86.7 219 34.2
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 5.3e-15 86.3 260 29.2
CARHR123930 Cardamine hirsuta HOM05D001940 ORTHO05D007630 7.0e-15 85.9 206 33.0
EL10Ac7g17950 Beta vulgaris HOM05D029401 ORTHO05D007630 9.1e-15 85.5 221 33.5
Glyma.11G198150 Glycine max HOM05D007641 ORTHO05D007630 2.0e-14 84.3 198 34.8
ATR1127G234 Amborella trichopoda HOM05D007641 ORTHO05D007630 1.7e-13 81.3 234 31.2
HPP92_015425 Vanilla planifolia HOM05D007641 ORTHO05D007630 6.5e-13 79.3 269 30.1
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 1.5e-12 78.2 336 26.8
PGR102G3245 Punica granatum HOM05D007641 ORTHO05D007630 2.5e-12 77.4 323 29.7
PSO384G0550 Papaver somniferum HOM05D007641 ORTHO05D007630 3.2e-12 77.0 168 36.3
BolC4t23545H Brassica oleracea HOM05D001940 ORTHO05D007630 9.4e-12 75.5 297 29.6
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 1.2e-11 75.1 285 29.8
BraA05t20424Z Brassica rapa HOM05D001940 ORTHO05D007630 1.6e-11 74.7 278 29.9
Gohir.D01G148301 Gossypium hirsutum HOM05D007641 ORTHO05D007630 6.1e-11 72.8 165 31.5
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 9.7e-09 65.5 277 27.4
arahy.Tifrunner.gnm1.ann1.F8RHVN Arachis hypogaea HOM05D007641 ORTHO05D007630 2.2e-08 64.3 123 35.8
Nitab4.5_0000002g0280 Nicotiana tabacum HOM05D014625 ORTHO05D007630 1.8e-07 61.2 341 27.0


User provided reference genes

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