Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004012m.g Citrus clementina HOM05D009764 ORTHO05D013404 1.3e-132 476.5 259 100.0
COL.COLO4_26261 Corchorus olitorius HOM05D009764 ORTHO05D012097 2.8e-26 123.2 275 37.1
Duzib041G0201 Durio zibethinus HOM05D009764 ORTHO05D012097 1.0e-23 114.8 267 37.1
Gohir.A05G192100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 4.7e-21 105.9 291 33.3
Duzib093G0780 Durio zibethinus HOM05D009764 ORTHO05D012097 6.1e-21 105.5 274 35.0
Haze_22534 Corylus avellana HOM05D009764 ORTHO05D001632 7.5e-19 98.6 267 34.1
Gorai.009G271900 Gossypium raimondii HOM05D009764 ORTHO05D012097 1.7e-18 97.4 280 34.3
Gohir.D02G095400 Gossypium hirsutum HOM05D009764 ORTHO05D012097 2.2e-18 97.1 260 33.8
Gorai.005G109100 Gossypium raimondii HOM05D009764 ORTHO05D012097 2.2e-18 97.1 260 33.8
Gohir.A05G258364 Gossypium hirsutum HOM05D009764 ORTHO05D012097 6.3e-18 95.5 281 34.2
Gohir.D05G260100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.1e-17 94.7 277 34.3
Thecc.08G031300 Theobroma cacao HOM05D009764 ORTHO05D012097 3.1e-17 93.2 285 31.9
Duzib116G0736 Durio zibethinus HOM05D009764 ORTHO05D012097 5.4e-17 92.4 267 31.8
Gohir.D05G195300 Gossypium hirsutum HOM05D009764 ORTHO05D012097 5.4e-17 92.4 276 33.0
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 5.4e-17 92.4 249 34.5
CiPaw.07G158700 Carya illinoinensis HOM05D009764 ORTHO05D001632 2.7e-16 90.1 253 31.2
Gorai.002G126600 Gossypium raimondii HOM05D009764 ORTHO05D012097 4.5e-16 89.4 249 32.1
Gorai.009G200200 Gossypium raimondii HOM05D009764 ORTHO05D012097 7.7e-16 88.6 276 32.6
Gohir.D01G102900 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.0e-15 88.2 249 32.5
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.0e-15 88.2 252 34.5
Cfa013859 Carpinus fangiana HOM05D009764 ORTHO05D001632 1.3e-15 87.8 271 28.8
Gorai.008G066400 Gossypium raimondii HOM05D001749 ORTHO05D001632 2.9e-15 86.7 252 34.5
Lj4C36T10 Lonicera japonica HOM05D001749 ORTHO05D001632 2.9e-15 86.7 252 31.3
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 5.0e-15 85.9 254 31.9
Gohir.A01G114500 Gossypium hirsutum HOM05D009764 ORTHO05D012097 5.0e-15 85.9 255 32.9
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 1.5e-14 84.3 249 33.7
COL.COLO4_22034 Corchorus olitorius HOM05D001749 ORTHO05D001632 1.5e-14 84.3 251 31.5
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 2.5e-14 83.6 249 32.1
Gohir.A11G182600 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.2e-14 82.8 255 29.4
Carub.0008s2808 Capsella rubella HOM05D001749 ORTHO05D001632 7.2e-14 82.0 266 31.6
AT5G66440 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 9.5e-14 81.6 252 31.7
Gorai.007G201500 Gossypium raimondii HOM05D001749 ORTHO05D001632 9.5e-14 81.6 246 30.9
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.2e-13 81.3 252 34.1
CSS0035839 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 2.1e-13 80.5 250 30.8
Cpa.g.sc1139.1 Carica papaya HOM05D001749 ORTHO05D001632 2.1e-13 80.5 274 31.4
Gohir.D11G189200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.8e-13 80.1 246 30.5
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 3.6e-13 79.7 267 31.1
CiPaw.08G059600 Carya illinoinensis HOM05D009764 ORTHO05D001632 4.7e-13 79.3 277 30.0
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 4.7e-13 79.3 259 29.3
RcHm_v2.0_Chr2g0100901 Rosa chinensis HOM05D001749 ORTHO05D001632 6.1e-13 79.0 269 31.2
Potri.005G229800 Populus trichocarpa HOM05D020394 ORTHO05D012097 8.0e-13 78.6 288 31.2
THA.LOC104826664 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 8.0e-13 78.6 244 29.9
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 8.0e-13 78.6 275 30.9
Thhalv10004766m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 2.3e-12 77.0 277 31.4
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 2.3e-12 77.0 254 29.1
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 2.3e-12 77.0 254 29.1
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 2.3e-12 77.0 249 31.7
Aa31LG1G14960 Aethionema arabicum HOM05D001749 ORTHO05D001632 4.0e-12 76.3 255 29.0
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 5.2e-12 75.9 249 30.9
FvH4_1g12780 Fragaria vesca HOM05D001749 ORTHO05D001632 6.8e-12 75.5 264 29.9
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 1.2e-11 74.7 256 29.7
Cfa004342 Carpinus fangiana HOM05D001749 ORTHO05D001632 1.5e-11 74.3 268 29.1
FAN19G1879 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.5e-11 74.3 264 29.9
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 1.5e-11 74.3 256 30.1
Potri.002G033100 Populus trichocarpa HOM05D020394 ORTHO05D012097 1.5e-11 74.3 304 29.6
CAN.G1226.48 Capsicum annuum HOM05D001749 ORTHO05D001632 2.0e-11 73.9 257 34.2
Manes.05G156600 Manihot esculenta HOM05D020394 ORTHO05D012097 2.0e-11 73.9 268 30.6
TWI36G0536 Tripterygium wilfordii HOM05D009764 ORTHO05D012097 3.4e-11 73.2 245 34.7
CARHR281310 Cardamine hirsuta HOM05D001749 ORTHO05D001632 4.4e-11 72.8 280 29.3
BcaNung05716 Brassica carinata HOM05D001749 ORTHO05D001632 5.7e-11 72.4 270 27.8
HanXRQChr04g0103991 Helianthus annuus HOM05D001749 ORTHO05D001632 7.5e-11 72.0 257 27.6
MBI10_g06727_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 7.5e-11 72.0 263 30.8
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 7.5e-11 72.0 252 30.2
Oeu030425.2 Olea europaea HOM05D001749 ORTHO05D001632 9.8e-11 71.6 238 29.0
THA.LOC104813819 Tarenaya hassleriana HOM05D010946 ORTHO05D012997 9.8e-11 71.6 250 32.4
Dinv39444 Davidia involucrata HOM05D001749 ORTHO05D001632 1.3e-10 71.2 259 31.3
Thhalv10010637m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 1.3e-10 71.2 255 30.2
Nitab4.5_0003265g0050 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.7e-10 70.9 265 32.5
A09p44040 Brassica napus HOM05D001749 ORTHO05D001632 2.2e-10 70.5 251 31.1
BolC8t50232H Brassica oleracea HOM05D001749 ORTHO05D001632 2.2e-10 70.5 248 31.9
FAN28G1045 Fragaria x ananassa HOM05D001749 ORTHO05D001632 2.2e-10 70.5 264 28.4
Solyc04g080640.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 2.8e-10 70.1 262 30.9
Sopen04g034230 Solanum pennellii HOM05D001749 ORTHO05D001632 2.8e-10 70.1 262 30.9
BraA09t39862Z Brassica rapa HOM05D001749 ORTHO05D001632 3.7e-10 69.7 251 31.1
CiPaw.02G020500 Carya illinoinensis HOM05D001749 ORTHO05D001632 3.7e-10 69.7 262 29.8
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 3.7e-10 69.7 258 29.5
Potri.007G021500 Populus trichocarpa HOM05D001749 ORTHO05D001632 3.7e-10 69.7 258 28.7
Sp5g11300 Schrenkiella parvula HOM05D001749 ORTHO05D001632 3.7e-10 69.7 254 30.3
PGSC0003DMG400003697 Solanum tuberosum HOM05D001749 ORTHO05D001632 3.7e-10 69.7 258 33.3
Actinidia19200 Actinidia chinensis HOM05D001749 ORTHO05D001632 4.9e-10 69.3 250 30.4
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.9e-10 69.3 258 29.5
AT1G27670 Arabidopsis thaliana HOM05D011733 ORTHO05D013404 8.3e-10 68.6 251 31.9
ATR0568G223 Amborella trichopoda HOM05D001749 ORTHO05D001632 1.1e-09 68.2 268 31.3
Manes.11G085200 Manihot esculenta HOM05D001749 ORTHO05D001632 1.1e-09 68.2 259 31.7
Rhsim06G0030100 Rhododendron simsii HOM05D001749 ORTHO05D001632 1.1e-09 68.2 245 30.6
THA.LOC104815168 Tarenaya hassleriana HOM05D011733 ORTHO05D013404 1.1e-09 68.2 279 29.7
Sabra05G0177700 Salix brachista HOM05D020394 ORTHO05D012097 1.4e-09 67.8 291 28.9
Hma1.2p1_0469F.1_g159000 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.8e-09 67.4 247 30.4
Duzib187G2007 Durio zibethinus HOM05D001749 ORTHO05D001632 2.4e-09 67.0 249 29.7
Sabra02G0026800 Salix brachista HOM05D020394 ORTHO05D012097 2.4e-09 67.0 288 27.1
Nitab4.5_0009228g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 3.2e-09 66.6 257 32.3
FAN15G1825 Fragaria x ananassa HOM05D001749 ORTHO05D001632 4.1e-09 66.2 255 29.0
FAN24G3069 Fragaria x ananassa HOM05D001749 ORTHO05D001632 4.1e-09 66.2 255 29.0
Peaxi162Scf00140g00031 Petunia axillaris HOM05D001749 ORTHO05D001632 4.1e-09 66.2 233 32.6
DCAR_013834 Daucus carota HOM05D001749 ORTHO05D001632 5.4e-09 65.9 254 28.3
Prupe.7G158300 Prunus persica HOM05D001749 ORTHO05D001632 5.4e-09 65.9 280 28.9
Sp1g23880 Schrenkiella parvula HOM05D011733 ORTHO05D013404 5.4e-09 65.9 273 30.8
Gohir.A03G079500 Gossypium hirsutum HOM05D009764 ORTHO05D012097 7.0e-09 65.5 195 31.3
Sabra09G0091300 Salix brachista HOM05D001749 ORTHO05D001632 7.0e-09 65.5 251 28.3
AL8G45100 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 9.2e-09 65.1 258 29.8
CANSAT25G1766 Cannabis sativa HOM05D001749 ORTHO05D001632 9.2e-09 65.1 284 26.8
Gohir.A10G096200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 9.2e-09 65.1 256 27.7
BcaB01g00565 Brassica carinata HOM05D001749 ORTHO05D001632 1.2e-08 64.7 245 30.6
FvH4_2g09200 Fragaria vesca HOM05D001749 ORTHO05D001632 1.2e-08 64.7 255 28.6
BolC5t31343H Brassica oleracea HOM05D011733 ORTHO05D013404 1.6e-08 64.3 280 28.9
CSS0005210 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 1.6e-08 64.3 244 29.9
BcaC06g34702 Brassica carinata HOM05D001749 ORTHO05D001632 2.0e-08 63.9 264 28.0
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 2.0e-08 63.9 265 27.9
BcaC05g26578 Brassica carinata HOM05D011733 ORTHO05D013404 2.7e-08 63.5 280 28.9
C08p26160 Brassica napus HOM05D001749 ORTHO05D001632 2.7e-08 63.5 246 31.3
Sp2g30290 Schrenkiella parvula HOM05D001749 ORTHO05D001632 2.7e-08 63.5 242 30.6
Sc02g0005800 Simmondsia chinensis HOM05D001749 ORTHO05D001632 2.7e-08 63.5 254 31.1
A07p17520 Brassica napus HOM05D001749 ORTHO05D001632 3.5e-08 63.2 258 29.5
BraA07t29472Z Brassica rapa HOM05D001749 ORTHO05D001632 3.5e-08 63.2 258 29.5
Eucgr.I01283 Eucalyptus grandis HOM05D001749 ORTHO05D001632 3.5e-08 63.2 256 29.7
FAN27G1258 Fragaria x ananassa HOM05D001749 ORTHO05D001632 3.5e-08 63.2 255 29.0
HanXRQChr11g0325491 Helianthus annuus HOM05D001749 ORTHO05D001632 3.5e-08 63.2 250 29.2
AL1G41190 Arabidopsis lyrata HOM05D011733 ORTHO05D013404 4.5e-08 62.8 262 31.7
BcaC07g39561 Brassica carinata HOM05D001749 ORTHO05D001632 4.5e-08 62.8 246 30.1
Manes.02G096700 Manihot esculenta HOM05D001749 ORTHO05D001632 4.5e-08 62.8 278 28.8
GSVIVG01018920001 Vitis vinifera HOM05D001749 ORTHO05D001632 4.5e-08 62.8 277 28.2
BcaC09g50057 Brassica carinata HOM05D001749 ORTHO05D001632 5.9e-08 62.4 241 30.7
C02p32490 Brassica napus HOM05D010946 ORTHO05D012997 5.9e-08 62.4 248 27.0
C07p25470 Brassica napus HOM05D001749 ORTHO05D001632 5.9e-08 62.4 272 27.2
CANSAT11G0884 Cannabis sativa HOM05D001749 ORTHO05D001632 5.9e-08 62.4 261 28.0
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 5.9e-08 62.4 253 26.9
RcHm_v2.0_Chr6g0265051 Rosa chinensis HOM05D001749 ORTHO05D001632 5.9e-08 62.4 255 29.8
THA.LOC104818171 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 5.9e-08 62.4 271 29.5
Aqoxy5G01581 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 7.8e-08 62.0 256 28.5
BcaC04g23126 Brassica carinata HOM05D001749 ORTHO05D001632 7.8e-08 62.0 265 30.2
BolC9t54075H Brassica oleracea HOM05D001749 ORTHO05D001632 7.8e-08 62.0 265 30.2
Dinv13495 Davidia involucrata HOM05D001749 ORTHO05D001632 7.8e-08 62.0 254 28.7
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 7.8e-08 62.0 254 28.3
PGR083G2645 Punica granatum HOM05D009764 ORTHO05D001632 7.8e-08 62.0 268 31.7
Aqoxy6G01165 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 1.0e-07 61.6 255 29.0
C01p29520 Brassica napus HOM05D001749 ORTHO05D001632 1.0e-07 61.6 241 30.7
BolC1t02894H Brassica oleracea HOM05D001749 ORTHO05D001632 1.0e-07 61.6 241 30.7
Eucgr.F01877 Eucalyptus grandis HOM05D009764 ORTHO05D001632 1.0e-07 61.6 262 30.2
Nitab4.5_0003001g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.0e-07 61.6 262 29.8
BolC7t43068H Brassica oleracea HOM05D001749 ORTHO05D001632 1.3e-07 61.2 264 27.7
Carub.0001s2617 Capsella rubella HOM05D011733 ORTHO05D013404 1.3e-07 61.2 275 29.1
A02p19870 Brassica napus HOM05D010946 ORTHO05D012997 1.7e-07 60.8 248 26.2
BraA02t07020Z Brassica rapa HOM05D010946 ORTHO05D012997 1.7e-07 60.8 248 26.2
FAN23G0952 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.7e-07 60.8 254 28.0
ECA232G4251 Erigeron canadensis HOM05D001749 ORTHO05D001632 2.3e-07 60.5 258 28.7
Lsat_1_v5_gn_4_117861 Lactuca sativa HOM05D001749 ORTHO05D001632 2.3e-07 60.5 259 26.6
Manes.18G019775 Manihot esculenta HOM05D020394 ORTHO05D012097 2.3e-07 60.5 279 28.7
A09p38420 Brassica napus HOM05D011733 ORTHO05D013404 2.9e-07 60.1 281 28.1
BraA09t39351Z Brassica rapa HOM05D011733 ORTHO05D013404 2.9e-07 60.1 281 28.1
Glyma.02G054400 Glycine max HOM05D001749 ORTHO05D001632 2.9e-07 60.1 252 31.7
MD02G1143400 Malus domestica HOM05D001749 ORTHO05D001632 2.9e-07 60.1 257 28.4
Manes.04G074762 Manihot esculenta HOM05D001749 ORTHO05D001632 2.9e-07 60.1 258 28.3
BraA01t02289Z Brassica rapa HOM05D001749 ORTHO05D001632 3.9e-07 59.7 244 28.3
Nitab4.5_0000746g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 3.9e-07 59.7 266 30.1
Cc07_g09890 Coffea canephora HOM05D001749 ORTHO05D001632 5.0e-07 59.3 278 28.4
Thhalv10008556m.g Eutrema salsugineum HOM05D011733 ORTHO05D013404 5.0e-07 59.3 256 30.9
HanXRQChr13g0395401 Helianthus annuus HOM05D001749 ORTHO05D001632 5.0e-07 59.3 265 26.8
QL06p047145 Quercus lobata HOM05D001749 ORTHO05D001632 5.0e-07 59.3 227 28.6
A01p23800 Brassica napus HOM05D001749 ORTHO05D001632 6.6e-07 58.9 244 28.3
Thhalv10019434m.g Eutrema salsugineum HOM05D010946 ORTHO05D012997 6.6e-07 58.9 249 26.1
FAN26G1634 Fragaria x ananassa HOM05D001749 ORTHO05D001632 6.6e-07 58.9 257 26.8
HanXRQChr16g0501491 Helianthus annuus HOM05D001749 ORTHO05D001632 6.6e-07 58.9 256 29.3
Actinidia22524 Actinidia chinensis HOM05D001749 ORTHO05D001632 8.6e-07 58.5 216 27.3
BolC2t09281H Brassica oleracea HOM05D010946 ORTHO05D012997 8.6e-07 58.5 248 27.0
ECA232G3131 Erigeron canadensis HOM05D001749 ORTHO05D001632 8.6e-07 58.5 289 28.4
BcaNung05717 Brassica carinata HOM05D001749 ORTHO05D001632 1.1e-06 58.2 83 39.8
Migut.B00219 Erythranthe guttata HOM05D001749 ORTHO05D001632 1.5e-06 57.8 250 28.0
Nitab4.5_0001617g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.5e-06 57.8 265 29.8
Thecc.01G031200 Theobroma cacao HOM05D001749 ORTHO05D001632 1.5e-06 57.8 233 29.6
BcaC05g26766 Brassica carinata HOM05D011733 ORTHO05D013404 1.9e-06 57.4 261 30.3
BcaB05g23254 Brassica carinata HOM05D001749 ORTHO05D001632 2.5e-06 57.0 242 28.9
BcaB05g23255 Brassica carinata HOM05D001749 ORTHO05D001632 2.5e-06 57.0 242 28.9
Aa31LG4G19030 Aethionema arabicum HOM05D001749 ORTHO05D001632 3.3e-06 56.6 259 26.6
MELO3C023313.2 Cucumis melo HOM05D001749 ORTHO05D001632 3.3e-06 56.6 247 28.3
Peaxi162Scf00010g00116 Petunia axillaris HOM05D001749 ORTHO05D001632 4.3e-06 56.2 224 29.0
C05p26300 Brassica napus HOM05D011733 ORTHO05D013404 5.6e-06 55.8 274 27.4
Haze_15059 Corylus avellana HOM05D001749 ORTHO05D001632 5.6e-06 55.8 245 28.2
Lj1g0015330 Lotus japonicus HOM05D001749 ORTHO05D001632 5.6e-06 55.8 249 28.1
Potri.005G120300 Populus trichocarpa HOM05D001749 ORTHO05D001632 5.6e-06 55.8 284 27.1
Prupe.8G094100 Prunus persica HOM05D001749 ORTHO05D001632 5.6e-06 55.8 252 28.6
Ah.05g177040 Amaranthus hybridus HOM05D001749 ORTHO05D001632 7.3e-06 55.5 256 30.5
BcaC05g26593 Brassica carinata HOM05D011733 ORTHO05D013404 7.3e-06 55.5 282 28.7
Migut.C00753 Erythranthe guttata HOM05D001749 ORTHO05D001632 9.5e-06 55.1 241 29.0


User provided reference genes

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