Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 8.5e-96 353.6 171 100.0
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.5e-79 297.7 175 83.4
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.8e-77 292.7 175 82.9
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.6e-70 269.6 175 73.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.3e-69 265.8 175 72.0
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.1e-69 265.4 175 72.6
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.1e-69 265.4 175 72.6
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.2e-68 263.5 175 72.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.4e-68 261.9 175 70.9
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 9.8e-68 260.4 175 70.9
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 2.9e-67 258.8 175 68.0
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.9e-67 258.1 175 69.1
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.4e-67 257.7 175 68.6
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.4e-67 257.7 177 68.4
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 8.3e-67 257.3 175 67.4
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 8.3e-67 257.3 175 69.1
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.1e-66 256.9 172 70.3
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.9e-66 256.1 175 69.1
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.9e-66 256.1 190 63.7
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.4e-66 255.8 175 68.0
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.4e-66 255.8 182 66.5
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.2e-66 255.4 175 68.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.1e-66 255.0 175 67.4
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 5.4e-66 254.6 175 68.6
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 9.2e-66 253.8 182 65.9
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.6e-65 253.1 174 67.2
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 2.7e-65 252.3 182 63.7
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 4.6e-65 251.5 175 66.9
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 4.6e-65 251.5 174 67.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 4.6e-65 251.5 174 67.2
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.8e-65 250.8 175 66.9
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.8e-65 250.8 175 66.9
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.7e-64 249.6 171 66.1
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 3.9e-64 248.4 175 65.7
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 3.9e-64 248.4 175 65.7
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 3.9e-64 248.4 190 61.1
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 6.6e-64 247.7 175 66.3
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.5e-63 246.5 182 63.7
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.5e-63 245.7 182 64.3
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.5e-63 245.7 182 63.7
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.5e-63 245.7 182 63.7
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.5e-63 245.7 190 60.5
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 4.3e-63 245.0 175 64.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 5.6e-63 244.6 175 64.6
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 7.3e-63 244.2 175 63.4
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 7.3e-63 244.2 174 64.9
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 7.3e-63 244.2 174 63.8
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-62 243.4 179 62.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-62 243.4 179 63.1
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.2e-62 243.4 177 62.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.6e-62 243.0 175 64.0
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 2.8e-62 242.3 171 64.3
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.6e-62 241.9 175 62.9
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 3.6e-62 241.9 175 64.0
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 3.6e-62 241.9 175 64.6
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 4.7e-62 241.5 190 58.4
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 6.2e-62 241.1 183 61.7
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 6.2e-62 241.1 175 64.0
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 8.0e-62 240.7 182 61.5
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 8.0e-62 240.7 175 64.0
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.1e-61 240.4 183 61.7
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.4e-61 240.0 190 57.9
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.1e-61 238.8 179 62.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 4.0e-61 238.4 175 60.0
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 4.0e-61 238.4 175 63.4
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 4.0e-61 238.4 175 62.9
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 5.2e-61 238.0 191 59.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 5.2e-61 238.0 175 62.3
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 5.2e-61 238.0 174 62.6
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 5.2e-61 238.0 190 57.9
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 6.8e-61 237.7 183 61.2
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 8.9e-61 237.3 175 62.9
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 8.9e-61 237.3 183 61.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 8.9e-61 237.3 183 61.2
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 8.9e-61 237.3 183 62.8
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.2e-60 236.9 178 62.4
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.2e-60 236.9 175 62.9
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.0e-60 236.1 183 61.2
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.0e-60 236.1 175 62.3
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.6e-60 235.7 175 64.0
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 3.4e-60 235.3 176 63.1
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 7.5e-60 234.2 183 60.7
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.3e-59 233.4 174 61.5
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.3e-59 233.4 183 59.6
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.3e-59 233.4 175 62.3
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 1.3e-59 233.4 182 58.8
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.3e-59 233.4 175 63.4
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.7e-59 233.0 176 62.5
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.7e-59 233.0 183 60.1
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.7e-59 233.0 182 59.3
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 2.2e-59 232.6 175 62.9
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.2e-59 232.6 182 58.2
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 2.9e-59 232.3 175 61.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 3.7e-59 231.9 171 61.4
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 6.4e-59 231.1 174 62.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.1e-58 230.3 175 58.3
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.9e-58 229.6 182 58.8
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.4e-58 229.2 175 59.4
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 5.4e-58 228.0 175 60.6
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 7.1e-58 227.6 174 60.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.6e-57 226.5 156 66.7
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.5e-57 225.3 212 52.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 3.5e-57 225.3 175 60.6
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.6e-57 224.9 175 62.3
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 6.0e-57 224.6 184 58.7
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 6.0e-57 224.6 182 58.8
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.3e-56 222.6 175 59.4
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 3.0e-56 222.2 175 58.3
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 6.2e-54 214.5 176 56.8
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 3.2e-50 202.2 174 54.0
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 5.4e-50 201.4 173 56.6
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.7e-48 196.4 212 50.5
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.2e-46 190.3 263 42.2
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 8.1e-46 187.6 174 51.1
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.4e-45 186.8 173 52.0
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 4.0e-45 185.3 173 52.6
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 5.8e-44 181.4 165 54.5
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.5e-39 166.8 125 64.0
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 2.8e-38 162.5 176 48.9
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 3.1e-37 159.1 173 50.3
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.1e-34 150.6 127 57.5
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 5.1e-32 141.7 153 47.1
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.2e-28 130.6 186 41.9
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 7.6e-28 127.9 167 42.5
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 7.1e-26 121.3 152 48.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 7.1e-26 121.3 80 65.0
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.5e-23 113.6 100 53.0
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 4.9e-19 98.6 186 34.9
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 8.4e-19 97.8 78 59.0
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.4e-18 97.1 129 47.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 6.0e-17 91.7 176 32.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-12 76.6 46 67.4
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-09 66.6 58 48.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.7e-09 66.2 110 30.0
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.9e-09 64.7 110 30.9
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.3e-08 63.2 109 33.9
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.2e-06 56.6 40 67.5


User provided reference genes

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