Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003791m.g Citrus clementina HOM05D000136 ORTHO05D000080 1.5e-72 276.2 144 100.0
Ciclev10003506m.g Citrus clementina HOM05D000136 ORTHO05D000080 9.8e-69 263.5 144 94.4
Ciclev10003244m.g Citrus clementina HOM05D000136 ORTHO05D000080 5.6e-48 194.5 202 58.4
Ciclev10003649m.g Citrus clementina HOM05D000136 ORTHO05D000080 3.7e-44 181.8 181 60.8
Ciclev10003210m.g Citrus clementina HOM05D000136 ORTHO05D000080 2.4e-35 152.5 171 53.2
Ciclev10003184m.g Citrus clementina HOM05D000136 ORTHO05D000080 1.7e-33 146.4 172 54.7
Ciclev10003697m.g Citrus clementina HOM05D000136 ORTHO05D000080 1.5e-29 133.3 122 63.1
Ciclev10003876m.g Citrus clementina HOM05D000136 ORTHO05D000080 6.6e-25 117.9 120 57.5
Atru.chr6.196 Acer truncatum HOM05D000136 ORTHO05D000080 5.6e-24 114.8 197 44.2
TWI59G1419 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 6.2e-23 111.3 195 44.1
Peaxi162Scf00000g00062 Petunia axillaris HOM05D000136 ORTHO05D000080 8.1e-23 110.9 197 40.1
Nitab4.5_0000288g0110 Nicotiana tabacum HOM05D000136 ORTHO05D000080 2.4e-22 109.4 195 40.0
QL02p103630 Quercus lobata HOM05D000136 ORTHO05D000080 4.0e-22 108.6 187 43.3
Solyc03g113930.3 Solanum lycopersicum HOM05D000136 ORTHO05D000080 1.2e-21 107.1 196 42.3
Cc02_g23670 Coffea canephora HOM05D000136 ORTHO05D000080 3.4e-21 105.5 186 39.2
Sopen03g032980 Solanum pennellii HOM05D000136 ORTHO05D000080 3.4e-21 105.5 186 41.4
PGSC0003DMG400024476 Solanum tuberosum HOM05D000136 ORTHO05D000080 4.4e-21 105.1 194 40.7
Cfa004429 Carpinus fangiana HOM05D000136 ORTHO05D000080 9.9e-21 104.0 198 40.9
PGR042G1027 Punica granatum HOM05D000136 ORTHO05D000080 9.9e-21 104.0 189 41.3
Manes.10G105900 Manihot esculenta HOM05D000136 ORTHO05D000080 2.9e-20 102.4 183 41.5
CAN.G853.6 Capsicum annuum HOM05D000136 ORTHO05D000080 3.8e-20 102.1 186 38.7
Nitab4.5_0003247g0010 Nicotiana tabacum HOM05D000136 ORTHO05D000080 6.4e-20 101.3 198 38.4
QL02p103613 Quercus lobata HOM05D000136 ORTHO05D000080 8.4e-20 100.9 187 41.7
PGSC0003DMG400020718 Solanum tuberosum HOM05D000136 ORTHO05D000080 1.1e-19 100.5 194 37.6
Peaxi162Scf00071g00002 Petunia axillaris HOM05D002321 ORTHO05D006445 1.9e-19 99.8 204 37.7
Haze_09969 Corylus avellana HOM05D000136 ORTHO05D000080 4.2e-19 98.6 194 38.7
Peaxi162Scf00011g00203 Petunia axillaris HOM05D000136 ORTHO05D000080 9.3e-19 97.4 188 38.3
Thecc.06G020500 Theobroma cacao HOM05D000136 ORTHO05D000080 9.3e-19 97.4 194 39.2
Manes.07G031300 Manihot esculenta HOM05D000136 ORTHO05D000080 1.2e-18 97.1 200 40.5
Manes.18G139820 Manihot esculenta HOM05D000136 ORTHO05D000080 2.7e-18 95.9 190 40.0
Sc18g0004300 Simmondsia chinensis HOM05D000136 ORTHO05D000080 3.5e-18 95.5 191 34.6
Lj1g0022257 Lotus japonicus HOM05D000136 ORTHO05D000080 1.0e-17 94.0 196 37.8
Ciclev10003298m.g Citrus clementina HOM05D000136 ORTHO05D000080 3.0e-17 92.4 123 45.5
Oeu016643.1 Olea europaea HOM05D000136 ORTHO05D000080 3.0e-17 92.4 203 37.4
Nitab4.5_0005164g0030 Nicotiana tabacum HOM05D000136 ORTHO05D000080 3.9e-17 92.0 197 38.6
THA.LOC104806613 Tarenaya hassleriana HOM05D000136 ORTHO05D000080 3.9e-17 92.0 194 38.7
MBI06_g17071_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 6.6e-17 91.3 179 37.4
Glyma.13G071400 Glycine max HOM05D000136 ORTHO05D000080 8.7e-17 90.9 204 35.8
Duzib268G1182 Durio zibethinus HOM05D000136 ORTHO05D000080 1.1e-16 90.5 185 38.9
Nn5g27140 Nelumbo nucifera HOM05D000136 ORTHO05D000080 3.3e-16 89.0 113 49.6
Prupe.1G586200 Prunus persica HOM05D000136 ORTHO05D000080 3.3e-16 89.0 198 34.8
DCAR_031996 Daucus carota HOM05D000136 ORTHO05D000080 5.6e-16 88.2 197 35.0
DCAR_029183 Daucus carota HOM05D000136 ORTHO05D000080 7.3e-16 87.8 197 35.0
Solyc01g102960.3 Solanum lycopersicum HOM05D000136 ORTHO05D000080 9.6e-16 87.4 198 36.4
Sopen01g045370 Solanum pennellii HOM05D000136 ORTHO05D000080 1.6e-15 86.7 197 36.0
GSVIVG01023134001 Vitis vinifera HOM05D000136 ORTHO05D000080 1.6e-15 86.7 193 35.2
Oeu045056.1 Olea europaea HOM05D000136 ORTHO05D000080 4.8e-15 85.1 115 45.2
CDE02G4055 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 1.1e-14 84.0 117 41.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 1.1e-14 84.0 176 36.9
AUR62032476 Chenopodium quinoa HOM05D000136 ORTHO05D000080 1.8e-14 83.2 116 46.6
CDE04G3561 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 2.4e-14 82.8 186 32.3
Eucgr.G00061 Eucalyptus grandis HOM05D000136 ORTHO05D000080 4.0e-14 82.0 201 34.3
CANSAT01G1589 Cannabis sativa HOM05D000136 ORTHO05D000080 5.3e-14 81.6 194 35.1
ATR1089G126 Amborella trichopoda HOM05D000136 ORTHO05D000080 6.9e-14 81.3 93 49.5
Ah.02g128490 Amaranthus hybridus HOM05D000136 ORTHO05D000080 1.2e-13 80.5 117 42.7
Glyma.19G011400 Glycine max HOM05D000136 ORTHO05D000080 2.0e-13 79.7 196 33.7
Gorai.005G043700 Gossypium raimondii HOM05D000136 ORTHO05D000080 2.6e-13 79.3 187 33.7
Aqoxy5G00809 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 3.4e-13 79.0 116 42.2
AUR62040131 Chenopodium quinoa HOM05D000136 ORTHO05D000080 5.8e-13 78.2 116 44.0
Gohir.D02G039500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 9.9e-13 77.4 187 33.2
MD15G1443700 Malus domestica HOM05D000136 ORTHO05D000080 9.9e-13 77.4 121 43.0
Migut.B00710 Erythranthe guttata HOM05D000136 ORTHO05D000080 1.3e-12 77.0 199 30.7
Lj9P258T31 Lonicera japonica HOM05D000136 ORTHO05D000080 1.3e-12 77.0 115 41.7
MD08G1249100 Malus domestica HOM05D000136 ORTHO05D000080 2.9e-12 75.9 121 41.3
Gohir.A02G032800 Gossypium hirsutum HOM05D000136 ORTHO05D000080 1.1e-11 73.9 187 34.8
MSTRG.16461 Avicennia marina HOM05D000136 ORTHO05D000080 1.4e-11 73.6 200 31.5
ClCG10G007510 Citrullus lanatus HOM05D000136 ORTHO05D000080 2.4e-11 72.8 187 30.5
CsaV3_7G008210 Cucumis sativus L. HOM05D000136 ORTHO05D000080 2.4e-11 72.8 196 34.2
MELO3C018485.2 Cucumis melo HOM05D000136 ORTHO05D000080 3.2e-11 72.4 196 33.2
Lsat_1_v5_gn_9_81920 Lactuca sativa HOM05D000136 ORTHO05D000080 3.2e-11 72.4 192 32.3
SGA_v2.0_scaffold131G34438 Striga asiatica HOM05D000136 ORTHO05D000080 3.2e-11 72.4 187 29.4
ClCG02G006430 Citrullus lanatus HOM05D000136 ORTHO05D000080 4.2e-11 72.0 199 34.2
HanXRQChr06g0168741 Helianthus annuus HOM05D000136 ORTHO05D000080 4.2e-11 72.0 174 33.3
Nn8g40657 Nelumbo nucifera HOM05D000136 ORTHO05D000080 5.4e-11 71.6 105 47.6
MELO3C016449.2 Cucumis melo HOM05D000136 ORTHO05D000080 9.3e-11 70.9 121 39.7
Lsat_1_v5_gn_9_82001 Lactuca sativa HOM05D000136 ORTHO05D000080 9.3e-11 70.9 192 32.3
CsaV3_3G006720 Cucumis sativus L. HOM05D000136 ORTHO05D000080 2.1e-10 69.7 114 41.2
HanXRQChr12g0355901 Helianthus annuus HOM05D000136 ORTHO05D000080 2.7e-10 69.3 193 33.2
vmacro23028 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 3.5e-10 68.9 171 32.7
CANSAT01G3011 Cannabis sativa HOM05D000136 ORTHO05D000080 4.6e-10 68.6 179 31.3
ECA236G5135 Erigeron canadensis HOM05D000136 ORTHO05D000080 7.9e-10 67.8 203 31.5
HanXRQChr10g0278431 Helianthus annuus HOM05D000136 ORTHO05D000080 7.9e-10 67.8 173 34.1
Rhsim11G0117500 Rhododendron simsii HOM05D000136 ORTHO05D000080 3.9e-09 65.5 189 31.2
Zm00001eb112330 Zea mays HOM05D000136 ORTHO05D000080 1.1e-08 63.9 122 34.4
Medtr1g076860 Medicago truncatula HOM05D000136 ORTHO05D000080 2.5e-08 62.8 103 35.0
A09p32850 Brassica napus HOM05D000136 ORTHO05D000080 7.4e-08 61.2 59 49.2
BraA09t38820Z Brassica rapa HOM05D000136 ORTHO05D000080 7.4e-08 61.2 59 49.2
CiPaw.04G007700 Carya illinoinensis HOM05D000136 ORTHO05D000080 7.4e-08 61.2 98 34.7
Medtr1g076880 Medicago truncatula HOM05D000136 ORTHO05D000080 7.4e-08 61.2 108 31.5
BcaC08g43858 Brassica carinata HOM05D000136 ORTHO05D000080 9.6e-08 60.8 103 35.0
BolC6t36398H Brassica oleracea HOM05D000136 ORTHO05D000080 9.6e-08 60.8 103 35.0
TPR.G16640 Trifolium pratense HOM05D000136 ORTHO05D000080 9.6e-08 60.8 112 32.1
Os11g0244200 Oryza sativa ssp. japonica HOM05D000136 ORTHO05D000080 1.3e-07 60.5 207 29.0
Sp1g28790 Schrenkiella parvula HOM05D000136 ORTHO05D000080 1.6e-07 60.1 59 50.8
EL10Ac6g13968 Beta vulgaris HOM05D000136 ORTHO05D000080 2.1e-07 59.7 92 40.2
AL1G47730 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 2.8e-07 59.3 59 50.8
Thhalv10009865m.g Eutrema salsugineum HOM05D000136 ORTHO05D000080 2.8e-07 59.3 59 50.8
Medtr1g076910 Medicago truncatula HOM05D000136 ORTHO05D000080 2.8e-07 59.3 108 31.5
Aa31LG6G7880 Aethionema arabicum HOM05D000136 ORTHO05D000080 3.7e-07 58.9 62 46.8
Medtr1g075470 Medicago truncatula HOM05D000136 ORTHO05D000080 3.7e-07 58.9 59 44.1
THA.LOC104815681 Tarenaya hassleriana HOM05D000136 ORTHO05D000080 3.7e-07 58.9 115 31.3
VMungo0464G1681 Vigna mungo HOM05D000136 ORTHO05D000080 4.8e-07 58.5 62 43.5
C06p12430 Brassica napus HOM05D000136 ORTHO05D000080 6.2e-07 58.2 103 34.0
Cpa.g.sc21.227 Carica papaya HOM05D000136 ORTHO05D000080 6.2e-07 58.2 116 33.6
CiPaw.03G011300 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.2e-07 58.2 110 31.8
Carub.0001s3153 Capsella rubella HOM05D000136 ORTHO05D000080 8.1e-07 57.8 59 50.8
ECA233G1720 Erigeron canadensis HOM05D000136 ORTHO05D000080 8.1e-07 57.8 59 49.2
AT4G10250 Arabidopsis thaliana HOM05D000136 ORTHO05D000080 1.1e-06 57.4 107 32.7
BcaB01g02762 Brassica carinata HOM05D000136 ORTHO05D000080 1.1e-06 57.4 107 32.7
BcaB07g32982 Brassica carinata HOM05D000136 ORTHO05D000080 1.1e-06 57.4 58 50.0
BcaC01g04689 Brassica carinata HOM05D000136 ORTHO05D000080 1.1e-06 57.4 107 32.7
A03p28880 Brassica napus HOM05D000136 ORTHO05D000080 1.1e-06 57.4 107 32.7
C03p34910 Brassica napus HOM05D000136 ORTHO05D000080 1.1e-06 57.4 107 32.7
BolC3t15802H Brassica oleracea HOM05D000136 ORTHO05D000080 1.1e-06 57.4 107 32.7
BraA03t12086Z Brassica rapa HOM05D000136 ORTHO05D000080 1.1e-06 57.4 107 32.7
Ca_09900_v3 Cicer arietinum L. HOM05D000136 ORTHO05D000080 1.1e-06 57.4 59 45.8
Glyma.10G176400 Glycine max HOM05D000136 ORTHO05D000080 1.1e-06 57.4 112 29.5
Glyma.16G206200 Glycine max HOM05D000136 ORTHO05D000080 1.1e-06 57.4 59 44.1
Phvul.004G129400 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 1.1e-06 57.4 59 44.1
Psat6g112800 Pisum sativum HOM05D000136 ORTHO05D000080 1.4e-06 57.0 112 33.0
Sp6g07200 Schrenkiella parvula HOM05D000136 ORTHO05D000080 1.4e-06 57.0 111 33.3
SEGI_22275 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 1.4e-06 57.0 59 47.5
AL6G44080 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 1.8e-06 56.6 107 31.8
EL10Ac1g01031 Beta vulgaris HOM05D000136 ORTHO05D000080 1.8e-06 56.6 59 45.8
Lsat_1_v5_gn_8_130841 Lactuca sativa HOM05D000136 ORTHO05D000080 1.8e-06 56.6 67 43.3
Lalb_Chr01g0008711 Lupinus albus HOM05D000136 ORTHO05D000080 1.8e-06 56.6 118 29.7
Manes.15G189500 Manihot esculenta HOM05D000136 ORTHO05D000080 1.8e-06 56.6 60 45.0
TPR.G16620 Trifolium pratense HOM05D000136 ORTHO05D000080 1.8e-06 56.6 99 32.3
VMungo0464G1548 Vigna mungo HOM05D000136 ORTHO05D000080 1.8e-06 56.6 59 42.4
Eucgr.F04109 Eucalyptus grandis HOM05D000136 ORTHO05D000080 2.4e-06 56.2 104 32.7
PSO528G0246 Papaver somniferum HOM05D000136 ORTHO05D000080 2.4e-06 56.2 101 34.7
Peaxi162Scf00391g00042 Petunia axillaris HOM05D000136 ORTHO05D000080 2.4e-06 56.2 111 33.3
SEGI_14676 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 2.4e-06 56.2 113 32.7
Haze_14024 Corylus avellana HOM05D000136 ORTHO05D000080 3.1e-06 55.8 59 42.4
Thhalv10029237m.g Eutrema salsugineum HOM05D000136 ORTHO05D000080 3.1e-06 55.8 107 30.8
Carub.0006s2880 Capsella rubella HOM05D000136 ORTHO05D000080 4.0e-06 55.5 107 30.8
Glyma.11G187200 Glycine max HOM05D000136 ORTHO05D000080 4.0e-06 55.5 59 42.4
Glyma.20G213900 Glycine max HOM05D000136 ORTHO05D000080 4.0e-06 55.5 112 29.5
Nn5g27145 Nelumbo nucifera HOM05D000136 ORTHO05D000080 4.0e-06 55.5 106 31.1
Aa31LG9G11750 Aethionema arabicum HOM05D000136 ORTHO05D000080 5.3e-06 55.1 102 32.4
CARHR256610 Cardamine hirsuta HOM05D000136 ORTHO05D000080 5.3e-06 55.1 112 30.4
Gohir.A13G120400 Gossypium hirsutum HOM05D000136 ORTHO05D000080 5.3e-06 55.1 62 41.9
Gorai.013G139100 Gossypium raimondii HOM05D000136 ORTHO05D000080 5.3e-06 55.1 62 41.9
MBI03_g21085_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 5.3e-06 55.1 118 31.4
Sed0021661 Sechium edule HOM05D000136 ORTHO05D000080 5.3e-06 55.1 120 31.7
SEGI_38179 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 5.3e-06 55.1 112 31.2
Ah.05g171020 Amaranthus hybridus HOM05D000136 ORTHO05D000080 6.9e-06 54.7 59 40.7
PGSC0003DMG400009255 Solanum tuberosum HOM05D000136 ORTHO05D000080 6.9e-06 54.7 64 43.8
Lj5g0004009 Lotus japonicus HOM05D000136 ORTHO05D000080 9.0e-06 54.3 59 47.5
MD10G1171200 Malus domestica HOM05D000136 ORTHO05D000080 9.0e-06 54.3 108 33.3
Medtr1g076890 Medicago truncatula HOM05D000136 ORTHO05D000080 9.0e-06 54.3 59 45.8
SEGI_25962 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 9.0e-06 54.3 105 31.4
Sopen11g010610 Solanum pennellii HOM05D000136 ORTHO05D000080 9.0e-06 54.3 66 43.9
TWI12G1287 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 9.0e-06 54.3 59 40.7
TAR376G1224 Trochodendron aralioides HOM05D000136 ORTHO05D000080 9.0e-06 54.3 60 43.3


User provided reference genes

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