Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 1.0e-35 152.9 80 100.0
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 7.7e-23 110.2 80 73.8
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 5.0e-22 107.5 80 76.2
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 6.5e-22 107.1 79 73.4
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 6.5e-22 107.1 79 73.4
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 8.5e-22 106.7 79 74.7
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 4.2e-21 104.4 79 72.2
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 5.5e-21 104.0 80 70.0
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 5.5e-21 104.0 80 70.0
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 5.5e-21 104.0 80 71.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 7.2e-21 103.6 80 68.8
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 7.2e-21 103.6 75 73.3
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 7.2e-21 103.6 75 73.3
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 7.2e-21 103.6 75 73.3
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 7.2e-21 103.6 75 73.3
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 7.2e-21 103.6 80 66.2
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 9.4e-21 103.2 80 71.2
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.4e-21 103.2 80 66.2
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.6e-20 102.4 80 67.5
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.6e-20 102.4 80 67.5
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.6e-20 102.4 80 66.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.1e-20 102.1 80 68.8
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 2.1e-20 102.1 80 66.2
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.1e-20 102.1 77 72.7
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.1e-20 102.1 77 72.7
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.1e-20 102.1 80 68.8
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.7e-20 101.7 80 68.8
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.7e-20 101.7 80 68.8
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 3.6e-20 101.3 80 68.8
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.6e-20 101.3 80 70.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.7e-20 100.9 80 68.8
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.1e-20 100.5 79 69.6
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 6.1e-20 100.5 80 67.5
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.0e-19 99.8 80 67.5
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.4e-19 99.4 80 70.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.4e-19 99.4 80 65.0
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.8e-19 99.0 80 66.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.3e-19 98.6 80 66.2
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.3e-19 98.6 80 68.8
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 3.0e-19 98.2 80 68.8
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.0e-19 98.2 79 64.6
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.0e-19 98.2 80 63.8
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 3.9e-19 97.8 82 65.9
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 5.1e-19 97.4 79 67.1
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 6.7e-19 97.1 79 64.6
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 8.8e-19 96.7 80 62.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.1e-18 96.3 80 67.5
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.1e-18 96.3 80 63.8
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.1e-18 96.3 80 65.0
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.5e-18 95.9 80 65.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.0e-18 95.5 67 73.1
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 2.0e-18 95.5 81 64.2
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.6e-18 95.1 57 87.7
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.6e-18 95.1 80 70.0
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 2.6e-18 95.1 80 60.0
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.6e-18 95.1 80 61.2
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.4e-18 94.4 79 67.1
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 4.4e-18 94.4 80 60.0
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.4e-18 94.4 81 63.0
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.4e-18 94.4 80 58.8
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 7.4e-18 93.6 80 61.2
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 9.7e-18 93.2 79 65.8
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 9.7e-18 93.2 81 63.0
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 9.7e-18 93.2 81 65.4
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 9.7e-18 93.2 74 71.6
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.3e-17 92.8 79 64.6
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.7e-17 92.4 80 66.2
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.7e-17 92.4 80 58.8
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.2e-17 92.0 79 62.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.8e-17 91.7 62 72.6
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.8e-17 91.7 80 60.0
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.7e-17 91.3 80 61.2
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 3.7e-17 91.3 48 95.8
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 3.7e-17 91.3 78 61.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 3.7e-17 91.3 78 61.5
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 4.8e-17 90.9 79 64.6
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 4.8e-17 90.9 78 60.3
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 6.3e-17 90.5 80 66.2
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.1e-16 89.7 73 63.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.4e-16 89.4 80 60.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.4e-16 89.4 80 58.8
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.4e-16 89.4 75 64.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.4e-16 89.4 80 62.5
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 1.4e-16 89.4 80 57.5
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.4e-16 88.6 80 63.8
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.1e-16 88.2 81 60.5
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 4.1e-16 87.8 75 62.7
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 7.0e-16 87.0 80 61.2
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 7.0e-16 87.0 60 70.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.0e-16 87.0 60 70.0
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 7.0e-16 87.0 73 61.6
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 9.1e-16 86.7 75 60.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-15 86.3 79 62.0
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.6e-15 85.1 75 60.0
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.6e-15 85.1 80 61.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.5e-15 84.7 79 62.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 4.5e-15 84.3 69 63.8
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.5e-15 84.3 81 59.3
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 4.5e-15 84.3 80 58.8
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 5.9e-15 84.0 80 57.5
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 5.9e-15 84.0 77 61.0
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 7.7e-15 83.6 81 59.3
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 7.7e-15 83.6 72 63.9
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 7.7e-15 83.6 80 53.8
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 7.7e-15 83.6 80 53.8
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.0e-14 83.2 81 58.0
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.0e-14 83.2 79 59.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.0e-14 83.2 79 60.8
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.7e-14 82.4 80 56.2
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.2e-14 82.0 78 61.5
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 6.5e-14 80.5 79 59.5
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 8.5e-14 80.1 75 57.3
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.1e-13 79.7 80 58.8
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.1e-13 79.7 56 71.4
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.5e-13 79.3 74 62.2
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-13 79.3 80 57.5
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 4.2e-13 77.8 80 57.5
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 4.2e-13 77.8 77 54.5
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 4.2e-13 77.8 71 57.7
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 7.2e-13 77.0 77 57.1
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 7.2e-13 77.0 78 56.4
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 9.4e-13 76.6 82 54.9
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 9.4e-13 76.6 71 56.3
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.2e-12 76.3 79 57.0
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 1.6e-12 75.9 80 56.2
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.6e-12 75.9 80 56.2
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.6e-12 75.9 80 55.0
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.1e-12 75.5 80 57.5
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 2.1e-12 75.5 78 56.4
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 2.1e-12 75.5 81 58.0
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 3.6e-12 74.7 72 54.2
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 3.6e-12 74.7 50 76.0
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.6e-12 74.7 76 51.3
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 6.1e-12 73.9 62 59.7
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.0e-11 71.2 81 53.1
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 5.2e-11 70.9 79 53.2
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 6.7e-11 70.5 72 56.9
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.7e-11 70.5 41 82.9
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.7e-11 70.5 41 82.9
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 6.7e-11 70.5 41 82.9
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.0e-10 68.9 72 56.9
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.6e-10 68.6 69 58.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.4e-10 67.8 78 50.0
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.3e-09 66.2 79 55.7
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.7e-09 64.7 72 54.2
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.1e-08 63.2 50 54.0
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.6e-07 59.3 79 46.8
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.5e-07 58.2 73 47.9
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.5e-07 58.2 73 47.9
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 3.5e-07 58.2 31 93.5
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 5.9e-07 57.4 79 50.6
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 7.7e-07 57.0 78 51.3
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.7e-07 57.0 64 53.1
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.7e-06 55.8 80 50.0
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.8e-06 54.7 69 44.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.5e-06 53.9 71 40.8
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 6.5e-06 53.9 80 45.0


User provided reference genes

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