Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003664m.g Citrus clementina HOM05D000129 ORTHO05D011253 1.7e-38 162.2 81 100.0
ClCG10G015670 Citrullus lanatus HOM05D000129 ORTHO05D011253 9.9e-10 66.6 62 58.1
MELO3C009809.2 Cucumis melo HOM05D000129 ORTHO05D000144 1.4e-08 62.8 55 56.4
Phvul.011G013900 Phaseolus vulgaris HOM05D000129 ORTHO05D000144 1.4e-08 62.8 55 60.0
Hma1.2p1_0579F.1_g182630 Hydrangea macrophylla HOM05D000129 ORTHO05D011253 2.4e-08 62.0 65 53.8
GSVIVG01033238001 Vitis vinifera HOM05D000129 ORTHO05D000144 2.4e-08 62.0 55 63.6
VMungo1127G1866 Vigna mungo HOM05D000129 ORTHO05D000144 3.2e-08 61.6 55 58.2
Atru.chr1.1152 Acer truncatum HOM05D000129 ORTHO05D000144 4.1e-08 61.2 55 56.4
CSS0021775 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000144 4.1e-08 61.2 55 58.2
vmacro13711 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 4.1e-08 61.2 55 60.0
Sed0013893 Sechium edule HOM05D000129 ORTHO05D000144 9.2e-08 60.1 55 56.4
Actinidia19432 Actinidia chinensis HOM05D000129 ORTHO05D000144 1.2e-07 59.7 55 60.0
Ah.10g031050 Amaranthus hybridus HOM05D000129 ORTHO05D011253 1.2e-07 59.7 55 58.2
CANSAT80G2724 Cannabis sativa HOM05D000129 ORTHO05D000144 1.2e-07 59.7 55 58.2
AUR62037252 Chenopodium quinoa HOM05D000129 ORTHO05D000144 1.6e-07 59.3 55 58.2
Ca_26131_v3 Cicer arietinum L. HOM05D000129 ORTHO05D011253 1.6e-07 59.3 59 52.5
Ciclev10030586m.g Citrus clementina HOM05D000129 ORTHO05D000144 1.6e-07 59.3 55 58.2
Glyma.09G225500 Glycine max HOM05D000129 ORTHO05D000144 1.6e-07 59.3 55 56.4
Thecc.05G151500 Theobroma cacao HOM05D000129 ORTHO05D000144 1.6e-07 59.3 57 52.6
Duzib093G0634 Durio zibethinus HOM05D000129 ORTHO05D000144 2.1e-07 58.9 55 52.7
MD12G1080700 Malus domestica HOM05D000129 ORTHO05D000144 2.1e-07 58.9 55 54.5
FAN06G2133 Fragaria x ananassa HOM05D000129 ORTHO05D000144 2.7e-07 58.5 62 53.2
Lj3g0021517 Lotus japonicus HOM05D000129 ORTHO05D000144 2.7e-07 58.5 55 58.2
arahy.Tifrunner.gnm1.ann1.F4JI80 Arachis hypogaea HOM05D000129 ORTHO05D000144 3.5e-07 58.2 55 56.4
Lsat_1_v5_gn_1_99900 Lactuca sativa HOM05D000129 ORTHO05D000144 3.5e-07 58.2 55 56.4
CSS0033392 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000144 4.6e-07 57.8 55 52.7
ECA248G2575 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.6e-07 57.8 55 56.4
Gohir.A10G242500 Gossypium hirsutum HOM05D000129 ORTHO05D000144 4.6e-07 57.8 54 61.1
Manes.11G108000 Manihot esculenta HOM05D000129 ORTHO05D000144 4.6e-07 57.8 55 56.4
Rhsim07G0061100 Rhododendron simsii HOM05D000129 ORTHO05D000144 4.6e-07 57.8 55 56.4
RcHm_v2.0_Chr1g0318981 Rosa chinensis HOM05D000129 ORTHO05D000144 4.6e-07 57.8 55 54.5
CsaV3_3G040750 Cucumis sativus L. HOM05D000129 ORTHO05D000144 6.0e-07 57.4 55 54.5
Dinv39653 Davidia involucrata HOM05D000129 ORTHO05D000144 6.0e-07 57.4 55 52.7
Lj7A575G45 Lonicera japonica HOM05D000129 ORTHO05D000144 6.0e-07 57.4 55 56.4
PSO384G1461 Papaver somniferum HOM05D000129 ORTHO05D000144 6.0e-07 57.4 56 53.6
TAR369G0501 Trochodendron aralioides HOM05D000129 ORTHO05D000144 6.0e-07 57.4 55 54.5
arahy.Tifrunner.gnm1.ann1.RF2KBN Arachis hypogaea HOM05D000129 ORTHO05D000144 7.8e-07 57.0 55 54.5
Dinv07416 Davidia involucrata HOM05D000129 ORTHO05D000144 7.8e-07 57.0 55 54.5
Dinv13977 Davidia involucrata HOM05D000129 ORTHO05D000144 7.8e-07 57.0 55 54.5
Gohir.D10G254500 Gossypium hirsutum HOM05D000129 ORTHO05D000144 7.8e-07 57.0 63 57.1
Gorai.011G295500 Gossypium raimondii HOM05D000129 ORTHO05D000144 7.8e-07 57.0 63 57.1
Lalb_Chr03g0024181 Lupinus albus HOM05D000129 ORTHO05D011253 7.8e-07 57.0 56 57.1
MD12G1080800 Malus domestica HOM05D000129 ORTHO05D000144 7.8e-07 57.0 44 61.4
Prupe.7G054200 Prunus persica HOM05D000129 ORTHO05D000144 7.8e-07 57.0 55 52.7
GSVIVG01001466001 Vitis vinifera HOM05D000129 ORTHO05D000144 7.8e-07 57.0 55 54.5
EL10Ac2g02889 Beta vulgaris HOM05D000129 ORTHO05D000144 1.0e-06 56.6 55 54.5
HanXRQChr01g0020981 Helianthus annuus HOM05D000129 ORTHO05D000144 1.0e-06 56.6 55 54.5
Lalb_Chr01g0000561 Lupinus albus HOM05D000129 ORTHO05D000144 1.0e-06 56.6 63 57.1
MD02G1298100 Malus domestica HOM05D000129 ORTHO05D000144 1.0e-06 56.6 54 53.7
SalBow6G0637 Salvia bowleyana HOM05D000129 ORTHO05D000144 1.0e-06 56.6 55 58.2
SalBow6G1230 Salvia bowleyana HOM05D000129 ORTHO05D011253 1.0e-06 56.6 55 58.2
TPR.G20244 Trifolium pratense HOM05D000129 ORTHO05D000144 1.0e-06 56.6 55 54.5
TAR636G2397 Trochodendron aralioides HOM05D000129 ORTHO05D000144 1.0e-06 56.6 55 56.4
Actinidia09307 Actinidia chinensis HOM05D000129 ORTHO05D000144 1.3e-06 56.2 55 52.7
Haze_03100 Corylus avellana HOM05D000129 ORTHO05D000144 1.3e-06 56.2 55 50.9
MD14G1077000 Malus domestica HOM05D000129 ORTHO05D000144 1.3e-06 56.2 55 50.9
PSO339G2288 Papaver somniferum HOM05D000129 ORTHO05D000144 1.3e-06 56.2 55 54.5
Psat7g202160 Pisum sativum HOM05D000129 ORTHO05D000144 1.3e-06 56.2 55 54.5
ATR0721G116 Amborella trichopoda HOM05D000129 ORTHO05D000144 1.7e-06 55.8 55 54.5
FvH4_7g01980 Fragaria vesca HOM05D000129 ORTHO05D000144 1.7e-06 55.8 55 52.7
FAN03G0435 Fragaria x ananassa HOM05D000129 ORTHO05D000144 1.7e-06 55.8 55 52.7
FAN10G3803 Fragaria x ananassa HOM05D000129 ORTHO05D000144 1.7e-06 55.8 55 52.7
vmacro21971 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 1.7e-06 55.8 55 52.7
Cfa010836 Carpinus fangiana HOM05D000129 ORTHO05D000144 2.3e-06 55.5 55 50.9
MELO3C025057.2 Cucumis melo HOM05D000129 ORTHO05D000144 2.3e-06 55.5 55 52.7
Medtr4g043690 Medicago truncatula HOM05D000129 ORTHO05D000144 2.3e-06 55.5 55 52.7
ClCG01G008160 Citrullus lanatus HOM05D000129 ORTHO05D000144 3.0e-06 55.1 55 52.7
Eucgr.K02010 Eucalyptus grandis HOM05D000129 ORTHO05D000144 3.0e-06 55.1 71 50.7
Sabra03G0150600 Salix brachista HOM05D000129 ORTHO05D000144 3.0e-06 55.1 43 62.8
Atru.chr11.2557 Acer truncatum HOM05D000129 ORTHO05D011340 3.9e-06 54.7 47 59.6
Actinidia39205 Actinidia chinensis HOM05D000129 ORTHO05D000144 3.9e-06 54.7 55 50.9
Aqoxy2G00254 Aquilegia oxysepala HOM05D000129 ORTHO05D000144 3.9e-06 54.7 46 60.9
Cc02_g30040 Coffea canephora HOM05D000129 ORTHO05D000144 3.9e-06 54.7 63 52.4
Psat7g055760 Pisum sativum HOM05D000129 ORTHO05D000144 5.1e-06 54.3 71 47.9
Rhsim03G0028600 Rhododendron simsii HOM05D000129 ORTHO05D000144 5.1e-06 54.3 55 49.1
Sabra01G0015200 Salix brachista HOM05D000129 ORTHO05D000144 5.1e-06 54.3 43 60.5
COL.COLO4_19333 Corchorus olitorius HOM05D000129 ORTHO05D000144 6.6e-06 53.9 60 53.3
DCAR_022364 Daucus carota HOM05D000129 ORTHO05D000144 6.6e-06 53.9 58 51.7
MD07G1026000 Malus domestica HOM05D000129 ORTHO05D000144 6.6e-06 53.9 69 52.2
Sed0021756 Sechium edule HOM05D000129 ORTHO05D000144 6.6e-06 53.9 55 50.9
Cpa.g.sc197.23 Carica papaya HOM05D000129 ORTHO05D000144 8.6e-06 53.5 55 50.9
Gohir.A09G121500 Gossypium hirsutum HOM05D000129 ORTHO05D000144 8.6e-06 53.5 55 50.9
TWI09G1066 Tripterygium wilfordii HOM05D000129 ORTHO05D000144 8.6e-06 53.5 55 52.7


User provided reference genes

Program Settings