Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003587m.g Citrus clementina HOM05D002903 ORTHO05D003066 2.2e-121 439.1 247 100.0
Dinv19537 Davidia involucrata HOM05D002903 ORTHO05D003066 1.8e-22 110.5 234 39.3
RcHm_v2.0_Chr2g0121941 Rosa chinensis HOM05D002903 ORTHO05D003066 1.2e-21 107.8 219 39.7
TWI79G0835 Tripterygium wilfordii HOM05D000001 ORTHO05D010162 1.2e-21 107.8 238 41.2
GSVIVG01022345001 Vitis vinifera HOM05D002903 ORTHO05D003066 1.2e-21 107.8 232 37.5
FvH4_1g24530 Fragaria vesca HOM05D002903 ORTHO05D003066 1.5e-21 107.5 199 40.2
Potri.005G064700 Populus trichocarpa HOM05D002903 ORTHO05D003066 1.5e-21 107.5 229 40.6
Dinv24393 Davidia involucrata HOM05D002903 ORTHO05D003066 7.6e-21 105.1 211 39.3
FAN28G2835 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.0e-20 104.8 199 40.2
FAN26G0773 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.3e-20 104.4 199 40.2
FAN19G0913 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.8e-20 102.8 199 40.2
FAN23G0840 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.8e-20 102.8 199 39.7
Sabra05G0053700 Salix brachista HOM05D002903 ORTHO05D003066 1.6e-18 97.4 223 41.3
Manes.12G157200 Manihot esculenta HOM05D002903 ORTHO05D003066 2.1e-18 97.1 233 39.1
CiPaw.03G119900 Carya illinoinensis HOM05D002903 ORTHO05D003066 3.5e-18 96.3 232 38.4
QL10p043057 Quercus lobata HOM05D002903 ORTHO05D003066 3.5e-18 96.3 231 41.6
Prupe.4G272900 Prunus persica HOM05D002903 ORTHO05D003066 1.0e-17 94.7 200 42.5
Atru.chr4.939 Acer truncatum HOM05D002903 ORTHO05D003066 1.8e-17 94.0 223 39.9
Duzib187G0480 Durio zibethinus HOM05D002903 ORTHO05D003066 6.7e-17 92.0 232 41.8
Gohir.D04G032100 Gossypium hirsutum HOM05D002903 ORTHO05D003066 6.7e-17 92.0 234 38.0
Gorai.012G036500 Gossypium raimondii HOM05D002903 ORTHO05D003066 6.7e-17 92.0 234 37.2
Hma1.2p1_0539F.1_g174540 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 8.7e-17 91.7 215 33.5
Gohir.A05G383200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.5e-16 90.9 234 36.3
COL.COLO4_35772 Corchorus olitorius HOM05D002903 ORTHO05D003066 2.5e-16 90.1 233 41.6
Eucgr.J01339 Eucalyptus grandis HOM05D002903 ORTHO05D003066 2.5e-16 90.1 190 36.3
Haze_25272 Corylus avellana HOM05D002903 ORTHO05D003066 4.3e-16 89.4 221 39.4
Haze_25271 Corylus avellana HOM05D002903 ORTHO05D003066 1.3e-15 87.8 221 38.9
Haze_25273 Corylus avellana HOM05D002903 ORTHO05D003066 1.3e-15 87.8 221 38.9
Thecc.01G134700 Theobroma cacao HOM05D002903 ORTHO05D003066 1.3e-15 87.8 234 38.9
CiPaw.04G081400 Carya illinoinensis HOM05D002903 ORTHO05D003066 1.4e-14 84.3 224 36.6
TAR376G0422 Trochodendron aralioides HOM05D002903 ORTHO05D003066 1.8e-14 84.0 204 37.7
Actinidia12224 Actinidia chinensis HOM05D002903 ORTHO05D003066 4.1e-14 82.8 190 38.4
Sabra07G0085500 Salix brachista HOM05D002903 ORTHO05D003066 6.9e-14 82.0 209 40.2
Potri.007G104500 Populus trichocarpa HOM05D002903 ORTHO05D003066 9.0e-14 81.6 215 36.7
Cfa002912 Carpinus fangiana HOM05D002903 ORTHO05D003066 2.6e-13 80.1 220 38.6
TWI75G0819 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 4.5e-13 79.3 93 51.6
Rhsim08G0001600 Rhododendron simsii HOM05D002903 ORTHO05D003066 1.0e-12 78.2 204 39.2
PGR102G0277 Punica granatum HOM05D002903 ORTHO05D003066 2.9e-12 76.6 165 40.0
Actinidia06611 Actinidia chinensis HOM05D002903 ORTHO05D003066 5.0e-12 75.9 190 38.9
Nitab4.5_0000496g0210 Nicotiana tabacum HOM05D002903 ORTHO05D003066 1.1e-11 74.7 185 35.7
DCAR_001203 Daucus carota HOM05D002903 ORTHO05D003066 1.4e-11 74.3 195 35.9
Nn1g06302 Nelumbo nucifera HOM05D002903 ORTHO05D003066 1.9e-11 73.9 243 35.4
Nn5g28499 Nelumbo nucifera HOM05D002903 ORTHO05D003066 3.2e-11 73.2 234 33.3
Cpa.g.sc42.173 Carica papaya HOM05D002903 ORTHO05D003066 4.2e-11 72.8 143 40.6
Medtr3g096450 Medicago truncatula HOM05D002903 ORTHO05D003066 1.2e-10 71.2 238 31.5
TPR.G30561 Trifolium pratense HOM05D002903 ORTHO05D003066 1.2e-10 71.2 211 31.8
Lalb_Chr08g0240931 Lupinus albus HOM05D002903 ORTHO05D003066 2.1e-10 70.5 100 42.0
TAR625G1102 Trochodendron aralioides HOM05D002903 ORTHO05D003066 2.1e-10 70.5 227 33.9
Oeu058296.1 Olea europaea HOM05D002903 ORTHO05D003066 3.5e-10 69.7 211 31.8
SalBow6G1573 Salvia bowleyana HOM05D002903 ORTHO05D003066 4.6e-10 69.3 132 41.7
TWI60G0469 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 4.6e-10 69.3 215 33.5
Hma1.2p1_1125F.1_g259580 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 6.1e-10 68.9 205 31.7
Oeu047153.1 Olea europaea HOM05D002903 ORTHO05D003066 6.1e-10 68.9 192 33.9
ECA234G1033 Erigeron canadensis HOM05D002903 ORTHO05D003066 1.0e-09 68.2 156 34.0
Eucgr.F02770 Eucalyptus grandis HOM05D002903 ORTHO05D003066 1.0e-09 68.2 188 33.5
Lj1g0005492 Lotus japonicus HOM05D002903 ORTHO05D003066 1.3e-09 67.8 221 32.6
Eucgr.J01342 Eucalyptus grandis HOM05D002903 ORTHO05D003066 1.8e-09 67.4 158 38.0
Peaxi162Scf00353g00026 Petunia axillaris HOM05D002903 ORTHO05D003066 1.8e-09 67.4 218 31.7
Cc10_g13350 Coffea canephora HOM05D002903 ORTHO05D003066 2.3e-09 67.0 232 33.2
COL.COLO4_38160 Corchorus olitorius HOM05D002903 ORTHO05D003066 2.3e-09 67.0 189 34.9
Sc26g0002820 Simmondsia chinensis HOM05D002903 ORTHO05D003066 2.3e-09 67.0 153 34.6
Gohir.D02G076000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.0e-09 66.6 207 33.8
Gorai.005G085300 Gossypium raimondii HOM05D002903 ORTHO05D003066 3.0e-09 66.6 207 33.8
TWI32G0321 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 3.9e-09 66.2 221 35.7
MSTRG.24179 Avicennia marina HOM05D002903 ORTHO05D003066 5.1e-09 65.9 84 45.2
Nitab4.5_0005642g0020 Nicotiana tabacum HOM05D002903 ORTHO05D003066 6.7e-09 65.5 188 30.9
TWI34G0043 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 6.7e-09 65.5 186 31.7
DCAR_014329 Daucus carota HOM05D002903 ORTHO05D003066 8.7e-09 65.1 228 31.1
Thecc.08G137400 Theobroma cacao HOM05D002903 ORTHO05D003066 1.1e-08 64.7 237 32.1
ClCG08G006250 Citrullus lanatus HOM05D002903 ORTHO05D003066 1.5e-08 64.3 183 35.5
MBI03_g20844_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 1.5e-08 64.3 231 34.2
Solyc05g056380.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 1.5e-08 64.3 154 37.0
Actinidia20071 Actinidia chinensis HOM05D002903 ORTHO05D003066 1.9e-08 63.9 197 34.5
Cpa.g.sc26.66 Carica papaya HOM05D002903 ORTHO05D003066 1.9e-08 63.9 230 30.4
CsaV3_6G031200 Cucumis sativus L. HOM05D002903 ORTHO05D003066 1.9e-08 63.9 183 34.4
Sopen05g034770 Solanum pennellii HOM05D002903 ORTHO05D003066 1.9e-08 63.9 154 37.0
Thecc.06G085500 Theobroma cacao HOM05D002903 ORTHO05D003066 1.9e-08 63.9 124 47.6
MELO3C008433.2 Cucumis melo HOM05D002903 ORTHO05D003066 2.5e-08 63.5 183 35.0
Thecc.06G085300 Theobroma cacao HOM05D002903 ORTHO05D003066 2.5e-08 63.5 141 44.0
Thecc.06G085900 Theobroma cacao HOM05D002903 ORTHO05D003066 2.5e-08 63.5 141 44.0
CSS0044801 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 3.3e-08 63.2 172 37.2
Lj7P356T43 Lonicera japonica HOM05D002903 ORTHO05D003066 3.3e-08 63.2 211 29.4
Aqoxy5G02305 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 7.4e-08 62.0 232 31.9
Glyma.06G154700 Glycine max HOM05D002903 ORTHO05D003066 7.4e-08 62.0 201 29.4
Atru.chr13.1637 Acer truncatum HOM05D002903 ORTHO05D003066 1.3e-07 61.2 170 33.5
Potri.002G075400 Populus trichocarpa HOM05D002903 ORTHO05D003066 1.3e-07 61.2 229 28.8
MSTRG.1394 Avicennia marina HOM05D002903 ORTHO05D003066 1.6e-07 60.8 177 33.3
Oeu001551.1 Olea europaea HOM05D002903 ORTHO05D003066 1.6e-07 60.8 214 32.2
Dinv41151 Davidia involucrata HOM05D002903 ORTHO05D003066 2.8e-07 60.1 196 32.1
PGSC0003DMG400012217 Solanum tuberosum HOM05D002903 ORTHO05D003066 2.8e-07 60.1 194 29.9
Migut.H00687 Erythranthe guttata HOM05D002903 ORTHO05D003066 3.7e-07 59.7 210 31.0
Glyma.13G036100 Glycine max HOM05D002903 ORTHO05D003066 3.7e-07 59.7 217 31.3
PGR044G0841 Punica granatum HOM05D002903 ORTHO05D003066 3.7e-07 59.7 189 34.9
VMungo1309G1474 Vigna mungo HOM05D002903 ORTHO05D003066 8.2e-07 58.5 220 27.7
Aqoxy1G01928 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 1.1e-06 58.2 75 46.7
Dinv25773 Davidia involucrata HOM05D002903 ORTHO05D003066 1.1e-06 58.2 209 30.1
Migut.N03253 Erythranthe guttata HOM05D002903 ORTHO05D003066 1.1e-06 58.2 189 30.2
Sabra05G0141500 Salix brachista HOM05D002903 ORTHO05D003066 1.4e-06 57.8 207 31.4
Cfa018400 Carpinus fangiana HOM05D002903 ORTHO05D003066 1.8e-06 57.4 108 39.8
SalBow7G1710 Salvia bowleyana HOM05D002903 ORTHO05D003066 1.8e-06 57.4 186 34.9
arahy.Tifrunner.gnm1.ann1.I47HGM Arachis hypogaea HOM05D002903 ORTHO05D003066 2.4e-06 57.0 67 44.8
Duzib041G0628 Durio zibethinus HOM05D002903 ORTHO05D003066 2.4e-06 57.0 196 31.6
Phvul.009G155800 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 2.4e-06 57.0 203 28.6
Sed0027661 Sechium edule HOM05D002903 ORTHO05D003066 2.4e-06 57.0 69 43.5
Sopen08g029160 Solanum pennellii HOM05D002903 ORTHO05D003066 2.4e-06 57.0 194 29.4
Gohir.D05G241400 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.1e-06 56.6 93 37.6
Gorai.009G250800 Gossypium raimondii HOM05D002903 ORTHO05D003066 3.1e-06 56.6 93 37.6
Manes.02G172300 Manihot esculenta HOM05D002903 ORTHO05D003066 3.1e-06 56.6 212 29.2
Medtr1g029550 Medicago truncatula HOM05D002903 ORTHO05D003066 3.1e-06 56.6 196 31.1
Oeu045975.1 Olea europaea HOM05D002903 ORTHO05D003066 3.1e-06 56.6 181 32.6
Actinidia03429 Actinidia chinensis HOM05D002903 ORTHO05D003066 4.1e-06 56.2 197 29.4
arahy.Tifrunner.gnm1.ann1.TSX9B2 Arachis hypogaea HOM05D002903 ORTHO05D003066 4.1e-06 56.2 202 32.2
DCAR_010240 Daucus carota HOM05D002903 ORTHO05D003066 4.1e-06 56.2 93 39.8
Glyma.04G243500 Glycine max HOM05D002903 ORTHO05D003066 4.1e-06 56.2 164 31.7
Manes.18G084700 Manihot esculenta HOM05D002903 ORTHO05D003066 4.1e-06 56.2 185 29.7
Gohir.A02G069300 Gossypium hirsutum HOM05D002903 ORTHO05D003066 5.3e-06 55.8 130 35.4
PGR042G1875 Punica granatum HOM05D002903 ORTHO05D003066 5.3e-06 55.8 197 31.5
Glyma.14G158800 Glycine max HOM05D002903 ORTHO05D003066 6.9e-06 55.5 193 32.1
Gohir.A02G112000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 6.9e-06 55.5 187 29.9
TPR.G28237 Trifolium pratense HOM05D002903 ORTHO05D003066 6.9e-06 55.5 174 32.2
arahy.Tifrunner.gnm1.ann1.Y173KB Arachis hypogaea HOM05D002903 ORTHO05D003066 9.0e-06 55.1 74 44.6
Duzib093G1863 Durio zibethinus HOM05D002903 ORTHO05D003066 9.0e-06 55.1 234 30.3
Oeu004513.1 Olea europaea HOM05D002903 ORTHO05D003066 9.0e-06 55.1 186 30.1


User provided reference genes

Program Settings