Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1450.3 696 100.0
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1183.7 642 85.5
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1178.7 649 84.6
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1173.7 651 84.6
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1168.7 649 84.0
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1167.9 638 85.1
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1163.3 649 82.7
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1155.2 649 82.1
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1144.0 650 81.4
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1143.6 649 81.8
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1143.6 649 81.2
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1141.7 649 81.0
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1139.8 648 81.0
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1138.6 649 81.4
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1138.6 650 82.6
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1134.4 634 85.6
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1132.9 644 83.9
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1127.9 649 80.6
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1127.1 639 82.2
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1125.2 639 82.2
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1124.4 649 79.5
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1122.8 649 80.6
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1120.9 649 80.3
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1119.0 649 79.4
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1118.6 696 77.3
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1117.8 653 81.0
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1115.5 649 79.2
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1115.5 646 79.1
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1114.0 644 80.4
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1113.6 649 79.0
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1113.2 649 79.5
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1112.4 649 77.0
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1112.4 646 78.3
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 653 79.8
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1107.0 656 77.4
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1104.0 650 78.8
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1103.6 649 77.7
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1102.8 649 78.9
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1097.0 649 76.7
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 0.0e+00 1096.6 651 77.7
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1095.5 645 79.1
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1095.5 649 75.8
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 649 76.6
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1092.8 641 79.1
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1092.8 649 78.6
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 0.0e+00 1089.3 649 77.0
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 0.0e+00 1088.9 649 78.3
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1087.8 680 74.3
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1084.7 639 77.2
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1082.0 649 76.4
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 0.0e+00 1081.6 648 75.9
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1081.6 638 79.2
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1078.2 722 71.2
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1077.0 805 66.2
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1077.0 661 75.8
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 4.8e-312 1073.9 651 76.3
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 4.8e-312 1073.5 645 76.0
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 9.5e-312 1073.2 669 74.4
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 9.5e-312 1072.8 650 76.9
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 2.4e-311 1071.6 643 76.2
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 1.0e-309 1066.2 645 75.0
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.8e-309 1065.4 648 76.1
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 2.3e-309 1065.1 670 73.1
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 2.6e-308 1061.6 648 75.5
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 5.7e-308 1060.4 635 76.2
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 5.7e-308 1060.4 648 75.2
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 7.5e-308 1060.1 654 76.1
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 1.3e-307 1059.3 613 79.1
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 1.3e-307 1059.3 656 73.9
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 4.9e-307 1057.4 647 74.8
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 7.0e-306 1053.5 635 76.1
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 3.5e-305 1051.2 650 74.9
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.0e-304 1049.7 648 74.8
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.0e-304 1049.7 648 74.8
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.0e-304 1049.7 648 74.8
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 8.6e-304 1046.6 649 74.0
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 1.9e-303 1045.4 648 74.2
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 3.3e-303 1044.6 597 80.7
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 7.3e-303 1043.5 613 78.5
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.8e-302 1041.6 649 73.3
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 4.7e-302 1040.8 592 80.1
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 7.5e-300 1033.5 790 63.8
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 1.2e-297 1026.2 645 73.6
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.1e-295 1019.6 643 72.9
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 1.5e-292 1009.2 650 74.8
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 3.3e-287 991.5 645 72.1
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 7.3e-287 990.3 586 79.4
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 1.5e-284 982.6 642 70.6
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.1e-279 966.5 643 73.3
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 2.3e-272 942.2 557 76.7
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 1.1e-266 923.3 592 71.6
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 3.8e-259 898.3 558 75.1
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 1.5e-255 886.3 575 71.1
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 9.0e-253 877.1 640 63.4
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 9.3e-250 867.1 638 63.6
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 9.4e-242 840.5 643 61.1
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 8.0e-209 731.1 514 68.1
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 7.8e-196 688.0 363 82.6
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 2.3e-179 633.3 374 80.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.2e-164 584.3 378 72.0
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 5.1e-163 578.9 559 53.0
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.7e-155 553.9 388 67.3
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 4.5e-143 512.7 531 49.5
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.1e-122 444.9 240 80.4
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 1.9e-85 321.2 742 31.3
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 3.6e-76 290.4 151 84.8
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 1.6e-68 265.0 244 57.8
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 1.4e-56 225.3 211 54.5
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.1e-28 131.7 72 86.1
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 3.7e-28 131.0 73 83.6
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.2e-26 125.9 70 75.7
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 5.8e-26 123.6 71 71.8
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 1.7e-25 122.1 65 84.6
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.2e-24 117.5 70 71.4
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 4.3e-21 107.5 101 57.4
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 6.2e-20 103.6 69 66.7
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 1.8e-19 102.1 66 75.8
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 1.8e-19 102.1 66 75.8
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 1.8e-19 102.1 66 75.8
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 1.0e-17 96.3 83 60.2
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.3e-14 85.9 52 67.3
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.8e-14 85.5 82 52.4
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 8.2e-12 76.6 99 47.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 4.6e-07 60.8 69 43.5
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 3.9e-06 57.8 66 43.9


User provided reference genes

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