Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10003105m.g Citrus clementina HOM05D009248 ORTHO05D011411 2.9e-60 235.0 113 100.0
Ciclev10030158m.g Citrus clementina HOM05D009248 ORTHO05D011411 4.2e-51 204.5 112 88.4
Atru.chr13.1919 Acer truncatum HOM05D009248 ORTHO05D011411 7.3e-27 124.0 101 64.4
arahy.Tifrunner.gnm1.ann1.RU7JNP Arachis hypogaea HOM05D009248 ORTHO05D011411 9.8e-24 113.6 85 65.9
Dinv36294 Davidia involucrata HOM05D009248 ORTHO05D011411 1.7e-23 112.8 103 55.3
Eucgr.H04911 Eucalyptus grandis HOM05D009248 ORTHO05D011411 8.3e-23 110.5 108 50.9
Cpa.g.sc55.60 Carica papaya HOM05D009248 ORTHO05D011411 1.8e-22 109.4 108 50.9
Lsat_1_v5_gn_6_48640 Lactuca sativa HOM05D002542 ORTHO05D005078 2.4e-22 109.0 102 55.9
SEGI_24703 Sequoiadendron giganteum HOM05D009248 ORTHO05D011411 7.0e-22 107.5 91 53.8
SGA_v2.0_scaffold8G04627 Striga asiatica HOM05D009248 ORTHO05D011411 2.0e-21 105.9 102 49.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.5e-19 99.8 105 51.4
DCAR_004036 Daucus carota HOM05D009248 ORTHO05D011411 1.9e-19 99.4 101 47.5
Thecc.05G224900 Theobroma cacao HOM05D009248 ORTHO05D011411 1.9e-19 99.4 81 60.5
SGA_v2.0_scaffold326G48753 Striga asiatica HOM05D009248 ORTHO05D011411 2.8e-18 95.5 85 52.9
EL10Ac4g08271 Beta vulgaris HOM05D000288 ORTHO05D000173 4.7e-18 94.7 108 47.2
Hma1.2p1_0237F.1_g099550 Hydrangea macrophylla HOM05D009248 ORTHO05D011411 3.1e-17 92.0 107 48.6
Os06g0131001 Oryza sativa ssp. japonica HOM05D009248 ORTHO05D011411 5.2e-17 91.3 107 43.0
HPP92_006102 Vanilla planifolia HOM05D009248 ORTHO05D011411 5.2e-17 91.3 108 44.4
FAN11G2848 Fragaria x ananassa HOM05D009248 ORTHO05D011411 2.0e-16 89.4 87 54.0
Hma1.2p1_0019F.1_g013770 Hydrangea macrophylla HOM05D009248 ORTHO05D011411 2.6e-16 89.0 107 39.3
Os04g0450825 Oryza sativa ssp. japonica HOM05D009248 ORTHO05D011411 1.7e-15 86.3 87 50.6
Os06g0160000 Oryza sativa ssp. japonica HOM05D009248 ORTHO05D011411 2.4e-14 82.4 101 39.6
Nn3g18111 Nelumbo nucifera HOM05D009248 ORTHO05D011411 7.0e-14 80.9 99 44.4
Os03g0390633 Oryza sativa ssp. japonica HOM05D009248 ORTHO05D011411 5.6e-11 71.2 89 46.1
Dinv05186 Davidia involucrata HOM05D002878 ORTHO05D003649 7.3e-11 70.9 76 48.7
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 6.2e-10 67.8 88 45.5
Os02g0457175 Oryza sativa ssp. japonica HOM05D009248 ORTHO05D011411 1.2e-08 63.5 57 47.4
Oeu022030.2 Olea europaea HOM05D009248 ORTHO05D011411 5.8e-08 61.2 59 49.2
Os02g0457325 Oryza sativa ssp. japonica HOM05D009248 ORTHO05D011411 7.5e-08 60.8 57 45.6
Nn8g40484 Nelumbo nucifera HOM05D009248 ORTHO05D011411 1.4e-06 56.6 58 46.6
Oeu044544.2 Olea europaea HOM05D000251 ORTHO05D000414 2.4e-06 55.8 56 44.6


User provided reference genes

Program Settings