Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 7.0e-47 190.3 96 100.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.1e-39 166.4 96 84.4
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 1.4e-39 166.0 96 84.4
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 1.8e-39 165.6 96 85.4
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.6e-38 162.5 97 82.5
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 4.5e-38 161.0 97 82.5
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 4.5e-38 161.0 97 82.5
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 4.5e-38 161.0 97 82.5
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 4.5e-38 161.0 97 82.5
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 4.5e-38 161.0 97 82.5
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 4.5e-38 161.0 96 81.2
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 5.9e-38 160.6 97 83.5
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 5.9e-38 160.6 97 83.5
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 5.9e-38 160.6 97 83.5
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 5.9e-38 160.6 97 83.5
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 5.9e-38 160.6 97 83.5
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 7.8e-38 160.2 97 83.5
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 7.8e-38 160.2 97 81.4
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 7.8e-38 160.2 97 79.4
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.0e-37 159.8 97 81.4
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.0e-37 159.8 97 81.4
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 1.3e-37 159.5 97 81.4
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.3e-37 158.7 97 79.4
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 2.3e-37 158.7 97 80.4
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 3.9e-37 157.9 98 78.6
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 3.9e-37 157.9 97 80.4
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 3.9e-37 157.9 96 81.2
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 5.0e-37 157.5 97 79.4
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 6.6e-37 157.1 97 79.4
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 6.6e-37 157.1 97 80.4
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 6.6e-37 157.1 100 81.0
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 6.6e-37 157.1 96 81.2
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 8.6e-37 156.8 97 79.4
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 8.6e-37 156.8 97 80.4
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 8.6e-37 156.8 100 79.0
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.1e-36 156.4 96 78.1
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 1.5e-36 156.0 98 78.6
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.5e-36 156.0 97 81.4
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 1.9e-36 155.6 98 77.6
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 1.9e-36 155.6 100 81.0
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 4.3e-36 154.5 97 79.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 4.3e-36 154.5 97 78.4
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 4.3e-36 154.5 97 78.4
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 5.6e-36 154.1 97 78.4
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 7.3e-36 153.7 100 78.0
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.6e-35 152.5 96 75.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 2.1e-35 152.1 100 79.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 2.1e-35 152.1 100 80.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 2.8e-35 151.8 102 77.5
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 2.8e-35 151.8 97 77.3
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.8e-35 151.8 97 78.4
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 3.6e-35 151.4 98 77.6
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 6.1e-35 150.6 96 72.9
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 6.1e-35 150.6 96 72.9
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.0e-34 149.8 100 78.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.0e-34 149.8 100 78.0
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.4e-34 149.4 100 77.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.8e-34 149.1 96 71.9
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.8e-34 149.1 99 75.8
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.3e-34 148.7 96 71.9
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.3e-34 148.7 96 71.9
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.1e-34 148.3 96 76.0
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 3.1e-34 148.3 99 77.8
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 4.0e-34 147.9 98 74.5
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 4.0e-34 147.9 97 76.3
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 4.0e-34 147.9 96 72.9
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 6.8e-34 147.1 96 75.0
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.2e-33 146.4 98 79.6
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 75.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 75.0
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 76.0
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.5e-33 146.0 96 70.8
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 79.6
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 79.6
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 72.4
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 2.6e-33 145.2 99 77.8
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 2.6e-33 145.2 98 77.6
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 78.6
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 4.4e-33 144.4 98 73.5
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.4e-33 144.4 97 79.4
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 7.5e-33 143.7 104 74.0
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.5e-33 143.7 100 74.0
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 7.5e-33 143.7 97 73.2
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 9.8e-33 143.3 99 73.7
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 9.8e-33 143.3 96 74.0
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 9.8e-33 143.3 98 73.5
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 98 73.5
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 98 73.5
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 75.5
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 77.6
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 2.9e-32 141.7 98 73.5
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 2.9e-32 141.7 95 73.7
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 2.9e-32 141.7 96 70.8
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 4.9e-32 141.0 100 75.0
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.9e-32 141.0 98 73.5
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 6.4e-32 140.6 98 72.4
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 6.4e-32 140.6 101 74.3
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 6.4e-32 140.6 98 71.4
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 8.3e-32 140.2 98 73.5
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.1e-31 139.8 96 74.0
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 1.1e-31 139.8 121 62.0
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 3.2e-31 138.3 98 74.5
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.2e-31 138.3 98 70.4
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.2e-31 138.3 98 70.4
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 7.0e-31 137.1 103 75.7
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 9.2e-31 136.7 102 71.6
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 1.6e-30 136.0 98 71.4
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 6.0e-30 134.0 97 68.0
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 7.8e-30 133.7 96 68.8
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 7.8e-30 133.7 96 68.8
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.0e-29 133.3 107 64.5
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.0e-29 133.3 94 72.3
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 1.7e-29 132.5 98 70.4
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 1.7e-29 132.5 94 67.0
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.7e-29 132.5 88 72.7
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 1.7e-29 132.5 88 70.5
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 69.4
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 3.9e-29 131.3 94 69.1
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 6.6e-29 130.6 73 80.8
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.5e-28 129.4 98 68.4
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.9e-28 129.0 100 70.0
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 2.5e-28 128.6 97 72.2
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.3e-28 128.3 124 59.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.3e-28 128.3 97 66.0
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.3e-28 128.3 97 66.0
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 4.3e-28 127.9 99 67.7
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 4.3e-28 127.9 86 70.9
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.6e-28 127.5 73 79.5
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.6e-28 127.5 73 79.5
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.6e-28 127.5 73 79.5
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.6e-28 127.5 89 70.8
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 7.3e-28 127.1 102 68.6
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 7.3e-28 127.1 98 69.4
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.1e-27 125.6 100 69.0
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 2.1e-27 125.6 95 65.3
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.8e-27 125.2 74 79.7
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 3.6e-27 124.8 96 63.5
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 3.1e-26 121.7 69 85.5
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 3.1e-26 121.7 95 61.1
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 6.8e-26 120.6 156 47.4
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 1.2e-25 119.8 107 59.8
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.3e-24 116.3 78 74.4
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 4.9e-24 114.4 87 65.5
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.1e-23 113.2 97 60.8
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 2.4e-23 112.1 97 60.8
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 9.2e-23 110.2 74 74.3
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 3.0e-21 105.1 73 68.5
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 5.1e-21 104.4 59 78.0
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-20 103.2 63 81.0
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 2.5e-20 102.1 92 58.7
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 2.6e-17 92.0 61 67.2
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 2.4e-10 68.9 88 42.0
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 3.1e-10 68.6 91 41.8
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.5e-09 66.2 66 51.5
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 4.2e-07 58.2 52 53.8


User provided reference genes

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