Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002912m.g Citrus clementina HOM05D008210 ORTHO05D010078 1.3e-52 209.5 109 100.0
TAR381G1599 Trochodendron aralioides HOM05D008210 ORTHO05D010078 1.4e-14 83.2 88 46.6
Atru.chr13.581 Acer truncatum HOM05D008210 ORTHO05D010078 4.0e-14 81.6 68 60.3
Haze_17600 Corylus avellana HOM05D008210 ORTHO05D010078 6.8e-14 80.9 106 41.5
Aqoxy2G03320 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 1.2e-13 80.1 95 41.1
Aqoxy6G00952 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 1.2e-13 80.1 95 41.1
Atru.chr13.582 Acer truncatum HOM05D008210 ORTHO05D010078 2.0e-13 79.3 68 58.8
Rhsim06G0039800 Rhododendron simsii HOM05D008210 ORTHO05D010078 4.4e-13 78.2 81 50.6
Gorai.010G013900 Gossypium raimondii HOM05D008210 ORTHO05D010078 5.8e-13 77.8 110 40.9
Prupe.1G386500 Prunus persica HOM05D008210 ORTHO05D010078 5.8e-13 77.8 89 49.4
Cfa018466 Carpinus fangiana HOM05D008210 ORTHO05D010078 7.5e-13 77.4 108 42.6
FAN15G3542 Fragaria x ananassa HOM05D008210 ORTHO05D010078 1.3e-12 76.6 95 50.5
Gohir.D06G011200 Gossypium hirsutum HOM05D008210 ORTHO05D010078 1.3e-12 76.6 109 39.4
Hma1.2p1_0023F.1_g015200 Hydrangea macrophylla HOM05D008210 ORTHO05D010078 1.7e-12 76.3 100 44.0
Lsat_1_v5_gn_1_19601 Lactuca sativa HOM05D008210 ORTHO05D010078 1.7e-12 76.3 79 45.6
Thecc.08G019400 Theobroma cacao HOM05D008210 ORTHO05D010078 2.2e-12 75.9 75 49.3
COL.COLO4_26398 Corchorus olitorius HOM05D008210 ORTHO05D010078 2.9e-12 75.5 77 49.4
Gohir.A06G013600 Gossypium hirsutum HOM05D008210 ORTHO05D010078 2.9e-12 75.5 112 37.5
Potri.014G038500 Populus trichocarpa HOM05D008210 ORTHO05D010078 3.7e-12 75.1 107 45.8
Sabra14G0027900 Salix brachista HOM05D008210 ORTHO05D010078 3.7e-12 75.1 80 53.8
QL02p006968 Quercus lobata HOM05D008210 ORTHO05D010078 1.1e-11 73.6 79 46.8
CiPaw.15G068700 Carya illinoinensis HOM05D008210 ORTHO05D010078 1.4e-11 73.2 96 45.8
Manes.05G166500 Manihot esculenta HOM05D008210 ORTHO05D010078 1.9e-11 72.8 103 45.6
FvH4_2g40530 Fragaria vesca HOM05D008210 ORTHO05D010078 3.2e-11 72.0 95 48.4
Nn5g29422 Nelumbo nucifera HOM05D008210 ORTHO05D010078 5.4e-11 71.2 95 42.1
SGA_v2.0_scaffold14G07009 Striga asiatica HOM05D008210 ORTHO05D010078 7.0e-11 70.9 93 48.4
Dinv36022 Davidia involucrata HOM05D000260 ORTHO05D002276 9.2e-11 70.5 77 51.9
Phvul.009G061375 Phaseolus vulgaris HOM05D008210 ORTHO05D010078 9.2e-11 70.5 100 46.0
VMungo1309G3066 Vigna mungo HOM05D008210 ORTHO05D010078 1.6e-10 69.7 105 44.8
RcHm_v2.0_Chr6g0300191 Rosa chinensis HOM05D008210 ORTHO05D010078 2.7e-10 68.9 102 45.1
Aqoxy6G00950 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 3.5e-10 68.6 68 48.5
ECA247G0280 Erigeron canadensis HOM05D008210 ORTHO05D010078 6.0e-10 67.8 82 40.2
Lj1g0017592 Lotus japonicus HOM05D008210 ORTHO05D010078 7.8e-10 67.4 105 44.8
Medtr3g111460 Medicago truncatula HOM05D008210 ORTHO05D010078 7.8e-10 67.4 112 42.9
TAR628G0004 Trochodendron aralioides HOM05D008210 ORTHO05D010078 7.8e-10 67.4 80 46.2
Ah.09g236870 Amaranthus hybridus HOM05D008210 ORTHO05D010078 3.0e-09 65.5 116 37.9
Ah.09g236890 Amaranthus hybridus HOM05D008210 ORTHO05D010078 3.0e-09 65.5 116 37.9
TPR.G12346 Trifolium pratense HOM05D008210 ORTHO05D010078 3.0e-09 65.5 113 38.9
Cpa.g.sc64.23 Carica papaya HOM05D008210 ORTHO05D010078 3.9e-09 65.1 87 36.8
Glyma.04G035200 Glycine max HOM05D008210 ORTHO05D010078 3.9e-09 65.1 110 43.6
SalBow8G0954 Salvia bowleyana HOM05D008210 ORTHO05D010078 8.6e-09 63.9 69 49.3
Psat0s3268g0120 Pisum sativum HOM05D008210 ORTHO05D010078 1.5e-08 63.2 111 42.3
Potri.002G130500 Populus trichocarpa HOM05D008210 ORTHO05D010078 1.5e-08 63.2 107 41.1
Ca_15536_v3 Cicer arietinum L. HOM05D008210 ORTHO05D010078 2.5e-08 62.4 86 46.5
Nn6g32154 Nelumbo nucifera HOM05D008210 ORTHO05D010078 2.5e-08 62.4 54 53.7
Nn7g37755 Nelumbo nucifera HOM05D008210 ORTHO05D010078 3.3e-08 62.0 52 53.8
Eucgr.F01503 Eucalyptus grandis HOM05D008210 ORTHO05D010078 4.3e-08 61.6 122 36.9
Nitab4.5_0000110g0010 Nicotiana tabacum HOM05D008210 ORTHO05D010078 4.3e-08 61.6 96 41.7
EL10Ac8g19959 Beta vulgaris HOM05D008210 ORTHO05D010078 5.6e-08 61.2 111 34.2
arahy.Tifrunner.gnm1.ann1.KBQ6U1 Arachis hypogaea HOM05D008210 ORTHO05D010078 7.3e-08 60.8 91 48.4
Glyma.06G035100 Glycine max HOM05D008210 ORTHO05D010078 9.5e-08 60.5 92 43.5
MBI16_g31333_MAGBIO Magnolia biondii HOM05D008210 ORTHO05D010078 2.8e-07 58.9 97 40.2
GSVIVG01009614001 Vitis vinifera HOM05D008210 ORTHO05D010078 2.8e-07 58.9 89 38.2
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 6.2e-07 57.8 88 38.6
MSTRG.22279 Avicennia marina HOM05D008210 ORTHO05D010078 1.8e-06 56.2 90 40.0
MELO3C010908.2 Cucumis melo HOM05D022138 ORTHO05D010078 1.8e-06 56.2 72 45.8
ClCG08G015480 Citrullus lanatus HOM05D022138 ORTHO05D010078 5.2e-06 54.7 89 41.6
Migut.N02682 Erythranthe guttata HOM05D008210 ORTHO05D010078 5.2e-06 54.7 43 55.8


User provided reference genes

Program Settings