Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 2.4e-69 265.4 133 100.0
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 4.2e-58 228.0 133 82.0
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 4.2e-58 228.0 133 82.7
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 1.2e-57 226.5 133 80.5
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 2.1e-57 225.7 133 81.2
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 4.6e-57 224.6 133 80.5
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.0e-56 223.4 133 79.7
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 3.0e-56 221.9 133 78.9
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 5.1e-56 221.1 133 78.2
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 6.7e-56 220.7 133 78.2
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 8.8e-56 220.3 133 78.2
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 4.3e-55 218.0 133 78.2
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 7.4e-55 217.2 133 75.9
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 9.7e-55 216.9 133 78.9
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 3.7e-54 214.9 131 76.3
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 1.4e-53 213.0 133 76.7
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 1.4e-53 213.0 133 77.4
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 1.4e-53 213.0 133 76.7
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 1.8e-53 212.6 133 78.2
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 4.1e-53 211.5 133 76.7
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 5.3e-53 211.1 133 75.9
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 9.1e-53 210.3 133 72.9
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 9.1e-53 210.3 133 76.7
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.2e-52 209.9 133 75.9
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 1.5e-52 209.5 133 74.4
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 2.6e-52 208.8 133 73.7
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.6e-52 208.8 133 73.7
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.6e-52 208.8 133 73.7
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 2.6e-52 208.8 133 72.9
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 4.5e-52 208.0 126 79.4
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 4.5e-52 208.0 133 73.7
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 7.7e-52 207.2 133 75.9
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 1.3e-51 206.5 131 73.3
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 1.7e-51 206.1 133 73.7
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 2.9e-51 205.3 131 71.8
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 2.9e-51 205.3 131 77.1
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 8.5e-51 203.8 128 75.0
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 8.5e-51 203.8 131 74.0
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 8.5e-51 203.8 133 72.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 8.5e-51 203.8 133 72.2
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 8.5e-51 203.8 133 72.2
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 1.1e-50 203.4 141 69.5
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.1e-50 203.4 133 72.2
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 1.4e-50 203.0 133 72.2
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.9e-50 202.6 129 74.4
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.5e-50 202.2 132 71.2
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 3.2e-50 201.8 131 73.3
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.2e-50 201.8 131 72.5
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 4.2e-50 201.4 131 71.8
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 5.5e-50 201.1 133 73.7
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 1.6e-49 199.5 133 72.2
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 2.1e-49 199.1 132 71.2
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 2.1e-49 199.1 133 74.4
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 6.1e-49 197.6 123 74.8
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 6.1e-49 197.6 133 71.4
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 1.0e-48 196.8 131 70.2
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.0e-48 196.8 131 70.2
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.3e-48 195.7 132 71.2
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 3.9e-48 194.9 133 71.4
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 5.1e-48 194.5 125 72.8
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.1e-47 193.4 125 72.0
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.1e-47 193.4 125 72.0
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.1e-47 193.4 130 66.9
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.5e-47 193.0 133 72.9
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 3.3e-47 191.8 131 67.9
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 7.4e-47 190.7 131 69.5
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.3e-46 189.9 128 69.5
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 2.2e-46 189.1 131 67.2
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 2.8e-46 188.7 131 70.2
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.8e-46 188.7 125 70.4
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.8e-46 188.7 125 72.8
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 2.8e-46 188.7 132 67.4
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 3.7e-46 188.3 131 67.2
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 4.8e-46 188.0 131 69.5
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 4.8e-46 188.0 127 71.7
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 6.3e-46 187.6 132 65.9
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 8.2e-46 187.2 136 67.6
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 1.1e-45 186.8 131 68.7
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 1.1e-45 186.8 131 68.7
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 1.1e-45 186.8 131 68.7
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 1.1e-45 186.8 131 68.7
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 1.4e-45 186.4 131 67.2
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 1.8e-45 186.0 133 69.2
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.8e-45 186.0 129 69.8
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 2.4e-45 185.7 132 65.2
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 2.4e-45 185.7 129 66.7
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 2.4e-45 185.7 131 67.2
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 4.1e-45 184.9 131 67.2
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 7.0e-45 184.1 131 66.4
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 9.1e-45 183.7 132 65.2
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 1.2e-44 183.3 131 65.6
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 1.2e-44 183.3 134 67.9
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.5e-44 183.0 129 66.7
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 2.6e-44 182.2 131 65.6
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 4.5e-44 181.4 129 69.0
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 4.5e-44 181.4 133 65.4
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 5.9e-44 181.0 141 64.5
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 5.9e-44 181.0 129 69.0
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 5.9e-44 181.0 172 55.2
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 7.7e-44 180.6 129 67.4
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 7.7e-44 180.6 133 66.2
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 7.7e-44 180.6 158 56.3
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 1.0e-43 180.3 140 65.0
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 5.0e-43 177.9 140 62.9
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 6.5e-43 177.6 144 62.5
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 1.4e-42 176.4 140 62.1
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 1.4e-42 176.4 133 63.2
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 3.2e-42 175.3 138 62.3
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 3.2e-42 175.3 138 62.3
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 1.0e-40 170.2 133 63.2
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 5.2e-40 167.9 131 63.4
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 9.1e-37 157.1 104 74.0
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 5.0e-35 151.4 131 58.8
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 3.2e-34 148.7 130 55.4
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 4.7e-33 144.8 95 72.6
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 2.6e-31 139.0 134 50.7
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 3.4e-31 138.7 129 53.5
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 7.5e-31 137.5 127 57.5
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.3e-30 136.7 93 68.8
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 6.3e-30 134.4 129 51.9
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 3.8e-27 125.2 71 84.5
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 3.6e-25 118.6 72 76.4
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 3.6e-25 118.6 76 73.7
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.0e-24 115.5 72 75.0
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.2e-23 113.6 76 68.4
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.5e-23 113.2 71 74.6
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 1.5e-23 113.2 72 72.2
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 2.8e-22 109.0 62 83.9
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 6.3e-22 107.8 62 80.6
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 6.3e-22 107.8 62 80.6
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 8.3e-22 107.5 73 68.5
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 1.6e-20 103.2 62 75.8
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 2.7e-20 102.4 71 67.6
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 3.5e-20 102.1 76 65.8
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 4.5e-20 101.7 78 64.1
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 4.5e-20 101.7 118 43.2
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 5.9e-20 101.3 65 72.3
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 5.0e-19 98.2 77 59.7
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.0e-15 86.3 77 57.1
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 2.6e-15 85.9 56 73.2
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 1.7e-14 83.2 64 60.9
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.8e-13 79.7 71 54.9
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 2.0e-12 76.3 53 66.0
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.3e-11 73.6 116 32.8
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 1.9e-10 69.7 126 33.3
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 1.2e-09 67.0 58 55.2
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 6.8e-08 61.2 109 30.3
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 4.4e-07 58.5 55 43.6


User provided reference genes

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