Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 6.2e-76 287.3 142 100.0
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.7e-20 103.2 130 51.5
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.2e-20 102.8 136 50.7
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.8e-20 102.4 130 50.8
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.1e-19 100.5 134 50.0
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-19 99.4 134 49.3
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 3.1e-19 99.0 138 50.7
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 9.1e-19 97.4 135 47.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.6e-18 96.7 132 52.3
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.5e-18 95.1 139 48.9
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.9e-17 92.4 139 48.2
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 3.8e-17 92.0 145 43.4
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 3.8e-17 92.0 134 48.5
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.0e-17 91.7 139 48.2
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.0e-17 91.7 138 48.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.6e-17 90.9 140 44.3
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 4.2e-16 88.6 146 47.9
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 4.0e-14 82.0 128 46.1
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 5.2e-14 81.6 140 44.3
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 6.8e-14 81.3 119 47.1
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.3e-12 77.0 137 43.1
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.2e-12 76.3 150 36.7
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.1e-11 73.9 71 62.0
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.1e-11 72.0 71 60.6
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 7.0e-11 71.2 141 42.6
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 9.2e-11 70.9 71 59.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.2e-11 70.9 71 59.2
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.2e-11 70.9 71 59.2
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 9.2e-11 70.9 96 50.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.6e-10 70.1 131 38.9
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.6e-10 70.1 75 56.0
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.6e-10 70.1 75 56.0
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.0e-10 69.7 93 52.7
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.9e-10 68.2 77 53.2
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 7.8e-10 67.8 143 38.5
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.3e-09 67.0 137 40.9
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.3e-09 67.0 141 37.6
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.3e-09 67.0 141 37.6
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.7e-09 66.6 139 36.7
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.7e-09 66.6 140 37.1
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.3e-09 66.2 130 41.5
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 3.8e-09 65.5 159 35.8
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.8e-09 65.5 126 36.5
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 5.0e-09 65.1 145 34.5
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.6e-09 64.7 130 38.5
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.5e-08 63.5 141 39.7
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.5e-08 63.5 68 52.9
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.9e-08 63.2 143 36.4
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.9e-08 63.2 137 34.3
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 1.9e-08 63.2 147 36.1
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.9e-08 63.2 102 46.1
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.5e-08 62.8 130 36.9
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 2.5e-08 62.8 131 35.9
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 2.5e-08 62.8 139 34.5
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 3.3e-08 62.4 121 37.2
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.3e-08 62.0 135 38.5
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 4.3e-08 62.0 109 38.5
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 4.3e-08 62.0 139 34.5
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.3e-08 61.2 138 35.5
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 7.3e-08 61.2 132 38.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 9.5e-08 60.8 111 38.7
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 9.5e-08 60.8 81 46.9
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 1.2e-07 60.5 135 34.1
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.6e-07 60.1 105 45.7
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 2.1e-07 59.7 142 35.2
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 2.8e-07 59.3 123 38.2
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 2.8e-07 59.3 44 70.5
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 3.6e-07 58.9 127 34.6
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.6e-07 58.9 131 38.2
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.6e-07 58.9 72 48.6
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.6e-07 58.9 110 35.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 4.7e-07 58.5 130 35.4
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.7e-07 58.5 109 40.4
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 4.7e-07 58.5 44 65.9
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 4.7e-07 58.5 81 48.1
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 6.1e-07 58.2 144 36.1
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 6.1e-07 58.2 118 37.3
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 6.1e-07 58.2 44 68.2
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 6.1e-07 58.2 58 56.9
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 6.1e-07 58.2 73 53.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 8.0e-07 57.8 68 51.5
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 8.0e-07 57.8 44 68.2
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.0e-06 57.4 129 34.9
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.0e-06 57.4 118 33.9
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.4e-06 57.0 115 36.5
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 118 33.9
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.4e-06 57.0 126 33.3
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 1.4e-06 57.0 82 47.6
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.8e-06 56.6 140 35.0
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.8e-06 56.6 72 48.6
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 2.3e-06 56.2 129 38.0
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.3e-06 56.2 99 45.5
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 2.3e-06 56.2 44 63.6
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 2.3e-06 56.2 137 35.8
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 2.3e-06 56.2 68 50.0
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 3.0e-06 55.8 113 38.9
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 3.0e-06 55.8 112 36.6
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 3.0e-06 55.8 113 38.9
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 115 37.4
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 4.0e-06 55.5 110 37.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.0e-06 55.5 133 34.6
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 4.0e-06 55.5 124 37.1
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-06 55.1 116 36.2
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 5.2e-06 55.1 113 38.9
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 5.2e-06 55.1 113 38.9
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-06 55.1 104 36.5
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 5.2e-06 55.1 66 53.0
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 5.2e-06 55.1 131 33.6
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 5.2e-06 55.1 57 56.1
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 5.2e-06 55.1 135 31.1
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 5.2e-06 55.1 56 55.4
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.8e-06 54.7 122 38.5
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 6.8e-06 54.7 74 47.3
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 6.8e-06 54.7 77 42.9
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 8.9e-06 54.3 58 48.3
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 8.9e-06 54.3 51 54.9


User provided reference genes

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