Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.5e-72 275.4 147 100.0
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.7e-52 209.5 148 76.4
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 75.7
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.2e-50 203.4 148 75.0
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.1e-50 202.6 148 75.7
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.1e-50 202.6 148 75.0
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 7.9e-50 200.7 148 74.3
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 73.6
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 3.9e-49 198.4 148 72.3
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 5.1e-49 198.0 148 73.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 5.1e-49 198.0 148 70.9
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 6.7e-49 197.6 148 71.6
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.6e-48 195.7 148 71.6
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 4.4e-48 194.9 148 71.6
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 5.7e-48 194.5 147 72.1
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.4e-48 194.1 148 70.9
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 9.7e-48 193.7 140 73.6
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.3e-47 193.4 140 73.6
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.3e-47 193.4 148 70.9
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.7e-47 193.0 148 69.6
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 1.7e-47 193.0 140 74.3
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.2e-47 192.6 141 73.8
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 2.2e-47 192.6 148 68.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.2e-47 192.6 148 70.9
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 8.2e-47 190.7 142 71.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 8.2e-47 190.7 148 72.3
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.1e-46 190.3 148 69.6
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.8e-46 189.5 148 70.9
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-46 189.5 148 70.3
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.4e-46 189.1 148 69.6
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.1e-46 188.7 148 70.3
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.1e-46 188.7 148 70.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.0e-44 183.7 148 68.2
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.7e-44 183.0 148 67.6
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.7e-44 183.0 148 68.9
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 2.2e-44 182.6 148 68.2
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.5e-43 179.1 152 65.8
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.2e-43 178.3 142 68.3
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 5.5e-43 177.9 150 66.0
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 7.2e-43 177.6 150 67.3
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 9.4e-43 177.2 151 64.9
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 9.4e-43 177.2 151 65.6
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.2e-42 176.8 148 67.6
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 2.1e-42 176.0 148 67.6
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.7e-42 174.9 148 63.5
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 6.1e-42 174.5 151 64.2
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 8.0e-42 174.1 150 63.3
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.0e-41 173.7 137 68.6
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.8e-41 172.9 150 63.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 3.9e-41 171.8 142 64.8
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 6.7e-41 171.0 132 69.7
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 6.7e-41 171.0 150 61.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 8.8e-41 170.6 150 62.7
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.0e-40 169.5 140 64.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 4.4e-40 168.3 150 60.7
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 7.4e-40 167.5 148 62.2
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 9.7e-40 167.2 152 60.5
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 9.7e-40 167.2 143 63.6
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 9.7e-40 167.2 152 63.2
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.7e-39 166.4 149 64.4
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.7e-39 166.4 149 64.4
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.2e-39 166.0 155 63.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.8e-38 162.9 141 63.8
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-38 162.9 149 63.1
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.1e-38 160.6 148 62.2
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 9.1e-38 160.6 141 60.3
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.5e-37 158.3 117 71.8
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 5.9e-37 157.9 138 60.9
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 7.7e-37 157.5 148 60.1
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-36 156.0 129 66.7
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.9e-36 155.6 121 67.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 6.5e-36 154.5 119 69.7
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.1e-35 153.7 148 63.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 5.5e-35 151.4 149 54.4
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 7.2e-35 151.0 148 60.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.2e-34 150.2 120 69.2
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 2.1e-34 149.4 119 68.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.1e-34 149.4 121 68.6
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.7e-34 148.3 119 68.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 4.7e-34 148.3 119 68.9
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.3e-33 146.0 115 68.7
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.0e-33 145.6 150 57.3
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.2e-33 144.8 138 61.6
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.5e-32 143.3 150 56.7
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-32 142.9 117 66.7
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-32 142.9 112 68.8
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 2.2e-31 139.4 148 55.4
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.8e-31 139.0 141 52.5
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.8e-31 139.0 148 58.8
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 4.8e-31 138.3 148 56.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.4e-30 136.0 148 56.8
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.1e-30 135.2 150 52.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.1e-30 135.2 150 52.7
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 5.3e-30 134.8 148 52.7
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.2e-29 133.7 148 52.7
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.6e-29 133.3 151 52.3
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 4.5e-29 131.7 112 62.5
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 5.9e-29 131.3 149 55.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 7.7e-29 131.0 148 52.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.3e-28 130.2 148 52.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.7e-28 129.8 119 61.3
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.7e-28 129.8 148 52.7
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 2.9e-28 129.0 148 52.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 2.9e-28 129.0 148 52.0
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 2.9e-28 129.0 148 52.0
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 2.9e-28 129.0 148 52.0
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 2.9e-28 129.0 148 52.0
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 2.9e-28 129.0 148 53.4
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 3.8e-28 128.6 148 52.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 8.5e-28 127.5 148 52.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.5e-27 126.7 125 56.8
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.5e-27 126.7 148 51.4
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 2.5e-27 125.9 111 62.2
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.7e-26 122.5 151 53.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.0e-25 120.6 148 52.7
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.8e-23 112.5 79 73.4
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.4e-22 110.2 148 43.2
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.4e-17 93.6 92 60.9
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 2.3e-17 92.8 96 55.2
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.2e-17 91.7 101 56.4
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-16 90.5 101 56.4
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.6e-16 89.4 119 49.6
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.8e-14 83.2 72 66.7
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.4e-14 82.8 92 53.3
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 5.4e-14 81.6 75 61.3
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 4.5e-13 78.6 56 69.6
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.5e-13 78.6 84 52.4
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.0e-12 77.4 62 67.7
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-12 77.0 69 62.3
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 4.3e-11 72.0 73 58.9
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 1.2e-08 63.9 136 34.6
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.9e-07 59.3 113 46.9
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.9e-07 59.3 113 46.9
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.3e-07 57.8 84 51.2
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 9.2e-06 54.3 130 29.2


User provided reference genes

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